Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_E20
         (795 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               214   8e-56
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)                   35   0.087
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)                  32   0.62 
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)           31   1.4  
SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)                 30   1.9  
SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   5.7  
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)                      29   5.7  
SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)                28   7.6  
SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)                   28   7.6  
SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)         28   7.6  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  214 bits (522), Expect = 8e-56
 Identities = 96/126 (76%), Positives = 108/126 (85%)
 Frame = -3

Query: 736 FGQRAVXKFASHTGATXIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVN 557
           +GQRA+ K+ASHTGAT IAGRFTPG FTNQIQAAFREPRLLIV DP  DHQP+TEASYVN
Sbjct: 82  YGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPRLLIVCDPRIDHQPVTEASYVN 141

Query: 556 IPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLASEVLRLRGVLPRDQRWDVVVDL 377
           IPVIA CNTDSPLR VD+AIPCN K  HSIGLM+WLLA EVLR+RG + R   W+++ DL
Sbjct: 142 IPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAREVLRMRGSISRALPWEIMPDL 201

Query: 376 FFYRDP 359
           +FYRDP
Sbjct: 202 YFYRDP 207


>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1772

 Score = 34.7 bits (76), Expect = 0.087
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = +3

Query: 378  KSTTTSQRWSRGSTPRSLSTSLANNHHIKPIEWEDLVLHGIAMST-NLSGE---SVLHKA 545
            K+TT   RWS+G TP       +   H   I    L+ HG   ST NL+ E    VL++ 
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNEN 1453

Query: 546  ITGMLTY 566
              G +TY
Sbjct: 1454 ELGTMTY 1460


>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
          Length = 315

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 475 HSIGLMWWLLASEVLRLRGVLP 410
           H  G +WW+L SE LR + VLP
Sbjct: 46  HDDGSVWWVLTSESLRAKAVLP 67


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = -2

Query: 683  CGTFHTRCFY*PDPSCIP*TTSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGH 504
            C   H+ C      SCI  + + DCI  C+ PS     F C+ +C         T++C +
Sbjct: 866  CKKCHSSC-----SSCIGPSAN-DCI-TCSDPSNALIGFTCKANCTPGQFKNTATRVCEN 918

Query: 503  CYP 495
            C+P
Sbjct: 919  CHP 921


>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
          Length = 432

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = -3

Query: 607 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 512
           LDP  +HQPIT+ +   I ++A   TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147


>SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +2

Query: 533  VAQSNHRNVDI*SFSNGLMVLCRVQYNQETWFTECSLDLVSKSTWCETSRNXRST 697
            V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN RS+
Sbjct: 876  VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMRSS 930


>SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = +3

Query: 366 R*KNKSTTTSQRWSRGSTPRSLSTSLANNHHIKPIEWEDL---VLHGIAMSTNLSGESVL 536
           R  N+  T   ++   STP   +    N+  ++P EW ++     H   +   L+GES  
Sbjct: 3   RGSNRRPTFKYKFGDSSTPFYSALKKQNDRSMRPWEWHEMKARYSHAQTLINALTGESKY 62

Query: 537 HKAITG 554
              +TG
Sbjct: 63  EFTLTG 68


>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
          Length = 487

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 365 TVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVGR-LGVAWDSNVHK 514
           +V  Q+  + P  +T  HT+     T   P HQ + +GR  G   DSNV +
Sbjct: 241 SVTNQMRGHEPRSITYNHTSITAPLTTGYPDHQGSYMGRYAGSVADSNVSR 291


>SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)
          Length = 225

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +2

Query: 533 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETWFTECSLDLVSKSTWCETSRNXR 691
           V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN R
Sbjct: 155 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 207


>SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)
          Length = 428

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -3

Query: 631 REPR-LLIVLDPAQDHQPITEASYVNIPVIALC-NTDSPLRFVDIAIPCNTK 482
           RE R +++ +D A  H P  + +Y NI +I L  NT S  + +D  I  N K
Sbjct: 255 RENRNIMLFMDNAPCHTPSLKNTYCNIKIIFLSKNTTSKTQPLDSGIIANWK 306


>SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)
          Length = 280

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +2

Query: 533 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETWFTECSLDLVSKSTWCETSRNXR 691
           V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN R
Sbjct: 196 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 248


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,614,428
Number of Sequences: 59808
Number of extensions: 475766
Number of successful extensions: 1153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)