Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_E20
(795 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 184 6e-47
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 177 5e-45
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 161 6e-40
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP... 32 0.38
At4g26590.1 68417.m03833 oligopeptide transporter OPT family pro... 30 1.5
At2g07020.1 68415.m00803 protein kinase family protein contains ... 30 2.0
At4g01760.1 68417.m00229 DC1 domain-containing protein similar t... 29 4.7
At5g23690.1 68418.m02777 polynucleotide adenylyltransferase fami... 28 6.2
At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin fa... 28 8.2
At4g26490.1 68417.m03812 expressed protein 28 8.2
>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
to laminin receptor-like protein GB:U01955 [Arabidopsis
thaliana]; identical to cDNA laminin receptor homologue
GI:16379
Length = 298
Score = 184 bits (448), Expect = 6e-47
Identities = 81/126 (64%), Positives = 98/126 (77%)
Frame = -3
Query: 736 FGQRAVXKFASHTGATXIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVN 557
+GQRAV KFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP DHQPI E + N
Sbjct: 86 YGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGN 145
Query: 556 IPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLASEVLRLRGVLPRDQRWDVVVDL 377
IP+IA C+TDSP+RFVDI IP N K HSIG ++WLLA VL++RG + Q+WDV+VDL
Sbjct: 146 IPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIAAGQKWDVMVDL 205
Query: 376 FFYRDP 359
FFYR+P
Sbjct: 206 FFYREP 211
>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 280
Score = 177 bits (432), Expect = 5e-45
Identities = 80/137 (58%), Positives = 98/137 (71%)
Frame = -3
Query: 769 PR*XVCXXIXXFGQRAVXKFASHTGATXIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 590
P+ + +GQRAV KFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 76 PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135
Query: 589 HQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLASEVLRLRGVLP 410
HQPI E + NIP IA C+TDSP+ FVDI IP N K HSIG ++WLLA VL++RG +
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIL 195
Query: 409 RDQRWDVVVDLFFYRDP 359
Q+WDV+VDLFFYR+P
Sbjct: 196 AAQKWDVMVDLFFYREP 212
>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 332
Score = 161 bits (390), Expect = 6e-40
Identities = 73/130 (56%), Positives = 91/130 (70%)
Frame = -3
Query: 769 PR*XVCXXIXXFGQRAVXKFASHTGATXIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 590
P+ + +GQRAV KFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 76 PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135
Query: 589 HQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLASEVLRLRGVLP 410
HQPI E + NIP IA C+TDSP+ FVDI IP N K HSIG ++WLLA VL++RG +
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIL 195
Query: 409 RDQRWDVVVD 380
Q+WDV+V+
Sbjct: 196 AAQKWDVMVN 205
>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
identical to SP|Q9GCB9 Mitochondrial ribosomal protein
S2 {Arabidopsis thaliana}; contains Pfam profile
PF00318: ribosomal protein S2
Length = 219
Score = 32.3 bits (70), Expect = 0.38
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -3
Query: 625 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 476
P ++V D + I EAS + IPV+A+ + + PL F + I P + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181
>At4g26590.1 68417.m03833 oligopeptide transporter OPT family
protein similar to SP|P40900 Sexual differentiation
process protein isp4 {Schizosaccharomyces pombe};
contains Pfam profile PF03169: OPT oligopeptide
transporter protein
Length = 753
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 481 SSHSIGLMWWLLAS-EVLRLRGVLPRDQRWDVVVDLFFY 368
S+ S G WWLL+S E + +LP+ W D+ FY
Sbjct: 555 STVSFGTTWWLLSSVENICNTDMLPKSSPWTCPGDVVFY 593
>At2g07020.1 68415.m00803 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 700
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -3
Query: 670 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 569
TP TNQ++ A E +LDP PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653
>At4g01760.1 68417.m00229 DC1 domain-containing protein similar to
T15B16.10 similar to A. thaliana CHP-rich proteins
encoded by T10M13, GenBank accession number AF001308
Length = 667
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +2
Query: 593 LCRVQYNQETWFTECSLDLVSKSTWC 670
+C + N TWF C S TWC
Sbjct: 569 ICEKETNPNTWFYTCKDHRASLHTWC 594
>At5g23690.1 68418.m02777 polynucleotide adenylyltransferase family
protein low similarity to SP|P13685 Poly(A) polymerase
(EC 2.7.7.19) {Escherichia coli O157:H7}; contains Pfam
profile PF01743: polyA polymerase family protein
Length = 527
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -3
Query: 328 PRNRLWYQLNQK*LLLSMKTGMKHWSQWLHGLK 230
PR+R W QLN K L LS K + L+GLK
Sbjct: 59 PRDREWKQLNSKDLGLSSSMIAKSTRKVLNGLK 91
>At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin
family protein contains Pfam domain, PF01190: Pollen
proteins Ole e I family
Length = 146
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = -3
Query: 529 DSPLRFVDIAIPCNTKSSHSIGLMWWLLASEVLRLRGVLPRDQRWD 392
D L ++A+ C TKS + + + V + +P +RWD
Sbjct: 49 DHVLEGAEVAVLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWD 94
>At4g26490.1 68417.m03812 expressed protein
Length = 200
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +3
Query: 621 RGSRNAAWIWLVKAPGVKRPAIXVAPVCXANFXT 722
R SR + WIW V RP I V + AN T
Sbjct: 29 RSSRTSLWIWCVAVFLAIRPRIPVFDIPNANLHT 62
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,574,330
Number of Sequences: 28952
Number of extensions: 315701
Number of successful extensions: 836
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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