Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_E19
         (792 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ...    30   1.5  
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain...    30   1.5  
At1g68730.1 68414.m07855 zinc finger (DNL type) family protein c...    30   1.5  
At3g53440.2 68416.m05898 expressed protein                             30   2.0  
At3g53440.1 68416.m05897 expressed protein                             30   2.0  
At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) conta...    29   3.5  
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela...    29   4.7  
At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138...    29   4.7  
At2g16410.1 68415.m01879 hypothetical protein similar to zinc fi...    28   8.2  

>At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7
           (SPL7) identical to squamosa promoter binding
           protein-like 7 [Arabidopsis thaliana] GI:5931635;
           contains Pfam profile PF03110: SBP domain
          Length = 775

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -1

Query: 516 TVVRQVSFTLLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGL-CLNASKAEA 340
           T+V+++    L+ C CD +      N      +H   ++   +K P AGL C    +A+ 
Sbjct: 632 TLVKKMEPDSLVHCTCDCDVRLLHENMDLASDIHRKHQSPIESKDPEAGLDCKERIQADC 691

Query: 339 SLAESGKD 316
           S    GK+
Sbjct: 692 SPDSGGKE 699


>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein
          Length = 564

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +2

Query: 101 KSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSH 274
           K S +  +PR R  LY D  +  + + K+T S+D+   NG +   S+ E   R+ + H
Sbjct: 142 KESQEVIKPRKRMRLYGDGGAVSSHLHKETSSVDV---NGFQVLPSQAESVKRIFERH 196


>At1g68730.1 68414.m07855 zinc finger (DNL type) family protein
           contains Pfam profile PF05180: DNL zinc finger
          Length = 170

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
 Frame = +2

Query: 14  FYESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTD 193
           FY+      +L+RS+    +   TP+Q  +S + +      ++L PD  S D+    +  
Sbjct: 39  FYKQQNPISALHRSKTTRVIEVVTPKQRNRSFSVFGSLADDSKLNPDEESNDS---AEVA 95

Query: 194 SIDLRDPNGLRRRVSRFECET------RLVKSHCLE 283
           SID++ P   R     F C +      RL+  H  E
Sbjct: 96  SIDIKLPR--RSLQVEFTCNSCGERTKRLINRHAYE 129


>At3g53440.2 68416.m05898 expressed protein
          Length = 512

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = +2

Query: 98  RKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC 277
           RKS+    +P  R+     L++RD++VK + D     +P    RR        RLV S  
Sbjct: 4   RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63

Query: 278 LEPPDSRGSTVSIS 319
               DSR   ++IS
Sbjct: 64  SPIEDSRSKKLNIS 77


>At3g53440.1 68416.m05897 expressed protein
          Length = 512

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = +2

Query: 98  RKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC 277
           RKS+    +P  R+     L++RD++VK + D     +P    RR        RLV S  
Sbjct: 4   RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63

Query: 278 LEPPDSRGSTVSIS 319
               DSR   ++IS
Sbjct: 64  SPIEDSRSKKLNIS 77


>At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) contains
           Pfam PF02732 : ERCC4 domain; contains TIGRFAM TIGR00596:
           DNA repair protein (rad1); almost identical to 5' repair
           endonuclease (GI:8926611) [Arabidopsis thaliana]
          Length = 956

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
 Frame = +2

Query: 35  GLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDP 214
           G S+ R +H+A + + +  ++   +TD +   +  E + D  S      KK       DP
Sbjct: 492 GSSVGRQEHEALMAAASSIRKLGKTTDMASGNNNPEPHVDKASCTKGKAKK-------DP 544

Query: 215 NGLRRRVSRFECETRLVKSHCLEPPDS--RGSTVSISLPDSA 334
             LRR +     +T   K   L  P++  + +  S S P  A
Sbjct: 545 TSLRRSLRSCNKKTTNSKPEILPGPENEEKANEASTSAPQEA 586


>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
           low similarity to nuclear matrix constituent protein 1
           (NMCP1) [Daucus carota] GI:2190187
          Length = 1042

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 22/74 (29%), Positives = 36/74 (48%)
 Frame = +2

Query: 92  QERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKS 271
           +E K+S D S+  H  E    + S  A  KK+ +S+  +D    +  +S  E     +++
Sbjct: 95  EEIKASVDESDLTHMREKSAYV-SALAEAKKREESLK-KDVGIAKECISSLEKTLHEMRA 152

Query: 272 HCLEPPDSRGSTVS 313
            C E   S GST+S
Sbjct: 153 ECAETKVSAGSTMS 166


>At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator protein -related'  based on similarity
           to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.
          Length = 568

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 596 ADIEGSKSNVAMXAWLPXASYPW 664
           AD+ GS  NV M AW P     W
Sbjct: 122 ADVNGSSHNVLMEAWKPRVKSVW 144


>At2g16410.1 68415.m01879 hypothetical protein similar to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 204

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +2

Query: 551 NNPTLGRICFAMIGRADIEGSKSNVAMXAWLP 646
           N+  LGR+  +++GR   +G +S  A+ ++LP
Sbjct: 38  NSALLGRLQLSLVGRMFHQGGRSTEALLSFLP 69


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,904,429
Number of Sequences: 28952
Number of extensions: 321340
Number of successful extensions: 805
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)