Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_E17
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    30   0.44 
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   7.1  

>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 582 EIDGRRIRVDYSITQRAHTPTPGIYMG 502
           E  GR + V  +   R H+PTPG YMG
Sbjct: 166 EFYGRVLNVQKAKRSRPHSPTPGKYMG 192


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 588 GMEIDGRRIRVDYSITQRAHTPT 520
           G EIDGR I VD+++++ A   T
Sbjct: 170 GTEIDGRPIAVDWAVSKDAFEAT 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,326,073
Number of Sequences: 5004
Number of extensions: 39826
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)