Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_E17
         (796 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07)                 64   2e-10
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)                 28   7.6  

>SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07)
          Length = 694

 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 25/30 (83%), Positives = 30/30 (100%)
 Frame = -2

Query: 588 GMEIDGRRIRVDYSITQRAHTPTPGIYMGK 499
           G+E+DGRRIRVDYS+T+RAHTPTPG+YMGK
Sbjct: 224 GIELDGRRIRVDYSVTKRAHTPTPGVYMGK 253


>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
          Length = 407

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 588 GMEIDGRRIRVDYSITQRAHTPTPGIYMG 502
           G EIDG  IRVD +   +AH     +++G
Sbjct: 33  GEEIDGFHIRVDLASNDKAHDHQRSVFIG 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,269,629
Number of Sequences: 59808
Number of extensions: 328445
Number of successful extensions: 650
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)