Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_E16
(815 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) 155 5e-38
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35) 36 0.039
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5) 30 2.6
SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27) 29 4.5
SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_588| Best HMM Match : p450 (HMM E-Value=0.17) 28 7.9
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15) 28 7.9
>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
Length = 328
Score = 155 bits (375), Expect = 5e-38
Identities = 76/140 (54%), Positives = 93/140 (66%)
Frame = -2
Query: 775 ENPXDVXVXSSRPFGQRAVXKFAAHXRXYAYCGTFHTRCFY*PDPSCIPVNLVS*LYWTL 596
ENP DV V S+RP+GQRA+ K+A+H G F F + + +
Sbjct: 69 ENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPRLL-IVCDP 127
Query: 595 XQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 416
DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN K HSIGLM+WLLAREVLR+RG
Sbjct: 128 RIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAREVLRMRG 187
Query: 415 VLPRDQRWDVVVDLFFYRXP 356
+ R W+++ DL+FYR P
Sbjct: 188 SISRALPWEIMPDLYFYRDP 207
Score = 43.6 bits (98), Expect = 2e-04
Identities = 19/22 (86%), Positives = 19/22 (86%)
Frame = -3
Query: 696 GXTPIAXRFTPGAFTNQIQAAF 631
G TPIA RFTPG FTNQIQAAF
Sbjct: 95 GATPIAGRFTPGTFTNQIQAAF 116
>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1772
Score = 35.9 bits (79), Expect = 0.039
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +3
Query: 375 KSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDLVLHGIAMST-NLSGE---SVLHKA 542
K+TT RWS+G TP ++ H I L+ HG ST NL+ E VL++
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNEN 1453
Query: 543 ITGMLTY 563
G +TY
Sbjct: 1454 ELGTMTY 1460
>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
Length = 315
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 472 HSIGLMWWLLAREVLRLRGVLP 407
H G +WW+L E LR + VLP
Sbjct: 46 HDDGSVWWVLTSESLRAKAVLP 67
>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 196 SCFWSTPCSRRMVCPGTR*VEHNCRRTSRRHRSA 95
+C W+ P R+ PG R H T+R H +A
Sbjct: 904 TCSWALPAHYRVHVPGQRSASHEAFDTTRPHENA 937
>SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)
Length = 418
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 370 RTNQPQHPSAGHGEA-HHEASTLHVPTTTTSNQ*SGKTWCC 489
R QP H ++ + A HH A LH P +TS + W C
Sbjct: 176 RDGQPCHGASMNNFAYHHAADFLHYPPVSTSYMPAHPYWTC 216
>SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +3
Query: 363 R*KNKSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDL---VLHGIAMSTNLSGESVL 533
R N+ T ++ STP + N+ ++P EW ++ H + L+GES
Sbjct: 3 RGSNRRPTFKYKFGDSSTPFYSALKKQNDRSMRPWEWHEMKARYSHAQTLINALTGESKY 62
Query: 534 HKAITG 551
+TG
Sbjct: 63 EFTLTG 68
>SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1601
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 414 TPRSLNTSRANNHHIKPIEWEDLVLHGIAMSTNLSGESVLH 536
T +SLN S N + P EW + V+ G+ LSG ++L+
Sbjct: 864 TAQSLNVSVDNLKFLAPTEWRE-VIPGLKQEILLSGSNMLN 903
>SB_588| Best HMM Match : p450 (HMM E-Value=0.17)
Length = 304
Score = 28.3 bits (60), Expect = 7.9
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 610 LYWTLXQDHQPITEASYVNIPVIALC 533
+ W + Q++ P+ Y +IP +ALC
Sbjct: 68 ILWEISQEYSPVILLWYYHIPFVALC 93
>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
Length = 487
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 365 VEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVGR-LGVAWDSNVHK 511
V Q+ + P +T HT+ T P HQ + +GR G DSNV +
Sbjct: 242 VTNQMRGHEPRSITYNHTSITAPLTTGYPDHQGSYMGRYAGSVADSNVSR 291
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,643,389
Number of Sequences: 59808
Number of extensions: 444480
Number of successful extensions: 1001
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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