Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_E14
(800 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 31 0.96
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 30 1.7
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 29 5.1
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 29 5.1
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 29 5.1
Z75714-2|CAB00059.1| 474|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z70213-6|CAA94176.1| 167|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p... 28 8.9
U80448-6|AAO12417.1| 687|Caenorhabditis elegans Hypothetical pr... 28 8.9
U80448-5|AAB37819.1| 975|Caenorhabditis elegans Hypothetical pr... 28 8.9
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical... 28 8.9
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical... 28 8.9
AF039718-5|AAP68905.1| 760|Caenorhabditis elegans Prion-like-(q... 28 8.9
AF039718-4|AAP68906.2| 696|Caenorhabditis elegans Prion-like-(q... 28 8.9
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 31.1 bits (67), Expect = 0.96
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = -2
Query: 703 PSPAXLXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPS 524
P+P T+T +NP TPTT TS N ++P+ + + AP +P+
Sbjct: 490 PTPVPTTTNTPPANPTTATPTTVG-TSKQTNTISPHLSTITGSIVTSTPTMAPQTSASPT 548
Query: 523 SLGMXKGVSPP 491
+ S P
Sbjct: 549 TTPTHTTASQP 559
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -2
Query: 703 PSPAXLXTSTRSSNPRFHTPTTPDLTSISINPLTP--Y*KEFAPGLKPPLSSEAPSAYLT 530
P+P T+T +NP TPTT + +I +P P + P S+ AP+A +
Sbjct: 490 PTPVPTTTNTPPANPTTATPTT--VGTIGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVN 547
Query: 529 PSS 521
P+S
Sbjct: 548 PTS 550
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 28.7 bits (61), Expect = 5.1
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = -2
Query: 706 PPSPAXLXTS-TRSSNPRFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSEAPSAY 536
P SP+ TS + S ++PT+P TS S +P +P +P P S +PS+
Sbjct: 1607 PVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSP 1666
Query: 535 LTPSSLGMXKGVSPPY 488
S SP Y
Sbjct: 1667 SYSPSSPRYSPTSPTY 1682
>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
F40H6.5 protein.
Length = 1288
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -2
Query: 736 IXXVSPLCIKPP-SPAXLXTSTRSSNPRFHTPTTPDLTSISI 614
I VS C++PP +P ++T ++ P+ T +T TS +I
Sbjct: 1142 IDTVSMACVRPPTTPTTTTSTTTTTTPKLTTTSTLPSTSTAI 1183
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 28.7 bits (61), Expect = 5.1
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = -2
Query: 706 PPSPAXLXTS-TRSSNPRFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSEAPSAY 536
P SP+ TS + S ++PT+P TS S +P +P +P P S +PS+
Sbjct: 1614 PVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSP 1673
Query: 535 LTPSSLGMXKGVSPPY 488
S SP Y
Sbjct: 1674 SYSPSSPRYSPTSPTY 1689
>Z75714-2|CAB00059.1| 474|Caenorhabditis elegans Hypothetical
protein ZC434.3 protein.
Length = 474
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 706 PPSPAXLXTSTRSSN-PRFHTPTTPDLTSISINPLTPY*KEFAPGL 572
PP+PA N P F+ P P + S++PL P+ +++ GL
Sbjct: 34 PPNPAPFKPRQEDYNLPPFYQPN-PGRDASSLSPLFPFHSQYSNGL 78
>Z70213-6|CAA94176.1| 167|Caenorhabditis elegans Hypothetical
protein ZK930.7 protein.
Length = 167
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 709 KPPSPAXLXTSTRSSNPRFHTPTTPDLTSISINPLT 602
KPP+P+ T N + P++P T S PLT
Sbjct: 101 KPPAPSARTPPTIYENLAINAPSSPSATDASSVPLT 136
>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
protein T20D3.11 protein.
Length = 1843
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 720 PYASSHPPLRXWXHQPDHQIPDS 652
P +S HPPL H +H PD+
Sbjct: 66 PTSSHHPPLNSSSHHSNHNYPDT 88
>U80448-6|AAO12417.1| 687|Caenorhabditis elegans Hypothetical
protein F59A3.2b protein.
Length = 687
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = -2
Query: 661 PRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP-SAYLTPSSLGMXKGVSPPYF 485
PR TP L + I+P+ +F P + PP +P A P++L S P
Sbjct: 525 PRVTLLPTPTLVFVPISPVKNLPSDFNPRIPPPQIYSSPGQALFNPTNLYPTPPSSLPNT 584
Query: 484 QVNDESQASRLISR 443
V ++ ++R
Sbjct: 585 YVPNQESFDESVNR 598
>U80448-5|AAB37819.1| 975|Caenorhabditis elegans Hypothetical
protein F59A3.2a protein.
Length = 975
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = -2
Query: 661 PRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP-SAYLTPSSLGMXKGVSPPYF 485
PR TP L + I+P+ +F P + PP +P A P++L S P
Sbjct: 525 PRVTLLPTPTLVFVPISPVKNLPSDFNPRIPPPQIYSSPGQALFNPTNLYPTPPSSLPNT 584
Query: 484 QVNDESQASRLISR 443
V ++ ++R
Sbjct: 585 YVPNQESFDESVNR 598
>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
protein Y57A10A.18b protein.
Length = 1459
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 565 PLSSEAPSAYLTPSSLGMXKGVSPP 491
P+++EAP+A PS + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227
>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
protein Y57A10A.18a protein.
Length = 1456
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 565 PLSSEAPSAYLTPSSLGMXKGVSPP 491
P+++EAP+A PS + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227
>AF039718-5|AAP68905.1| 760|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform a protein.
Length = 760
Score = 27.9 bits (59), Expect = 8.9
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
Frame = -2
Query: 724 SPLCIKPPSPAXLXTSTRSS--NPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSE 551
SP ++ P+ + T ++S NP++H PT DL + P P + ++
Sbjct: 580 SPDAVETPTNSGSSTPPQTSVRNPKYHVPTPTDLPPPPVWP-APNFDRRRKSSETSFTTN 638
Query: 550 APSAYLTPSSLGMXKGVSPPYFQVNDESQASRLISRHSTHTP 425
+ LTPS+ + P + + + S+ + + P
Sbjct: 639 TTTNTLTPSTPVTPPVLRPAFSESKAPQEPSKPVETKENNKP 680
>AF039718-4|AAP68906.2| 696|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform b protein.
Length = 696
Score = 27.9 bits (59), Expect = 8.9
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
Frame = -2
Query: 724 SPLCIKPPSPAXLXTSTRSS--NPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSE 551
SP ++ P+ + T ++S NP++H PT DL + P P + ++
Sbjct: 482 SPDAVETPTNSGSSTPPQTSVRNPKYHVPTPTDLPPPPVWP-APNFDRRRKSSETSFTTN 540
Query: 550 APSAYLTPSSLGMXKGVSPPYFQVNDESQASRLISRHSTHTP 425
+ LTPS+ + P + + + S+ + + P
Sbjct: 541 TTTNTLTPSTPVTPPVLRPAFSESKAPQEPSKPVETKENNKP 582
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,806,180
Number of Sequences: 27780
Number of extensions: 355399
Number of successful extensions: 1134
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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