Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_E13
(790 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.34
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 30 1.8
10_08_0438 + 17919355-17919391,17919491-17919544,17919928-179201... 30 2.4
07_03_0846 - 21983581-21986055 30 2.4
02_01_0270 + 1793776-1793943,1794233-1794308,1795400-1795407,179... 29 5.6
05_01_0492 - 4102379-4103494,4104105-4104383,4105395-4105724 28 7.4
01_06_0695 - 31292622-31293317 28 7.4
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 28 9.7
02_04_0515 + 23582105-23583519,23583613-23583741,23583835-235839... 28 9.7
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 9.7
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.34
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +3
Query: 75 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 203
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -1
Query: 343 AGLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 209
A A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>10_08_0438 +
17919355-17919391,17919491-17919544,17919928-17920186,
17920396-17920484,17920645-17920775,17920900-17920946,
17921029-17921137,17921217-17921303,17921521-17921692,
17921837-17922309,17922402-17922463,17922537-17922639,
17923535-17923636
Length = 574
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -1
Query: 433 FGHLVHALGRAAGGAKLPSAGLCLNASKAGAGLAESGKDMLTV 305
FG +HAL + G L C N+ +GAG E+ KD+L V
Sbjct: 245 FGDKLHALLESTGAKYLHVDEFCANSQDSGAG--ENDKDILLV 285
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +3
Query: 201 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARPAPA 350
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>02_01_0270 +
1793776-1793943,1794233-1794308,1795400-1795407,
1795778-1795837,1796300-1796421,1796613-1796685,
1796777-1796926
Length = 218
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = -1
Query: 373 GLCLNASKAGAGLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRR 224
GL +N +A GLA+ +++ + P +S G+K R ++RE ++
Sbjct: 153 GLAVNRKRAERGLAQLEIEVVELVPEKSTGNKISSTAFRKKEAERELHKQ 202
>05_01_0492 - 4102379-4103494,4104105-4104383,4105395-4105724
Length = 574
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -1
Query: 412 LGRAAGGAKLPSAGLCLNASKAGAGLAESGK--DMLTVEPRESGG 284
LG AA GA +A ++S AG G D+++ +P+E GG
Sbjct: 12 LGLAASGAGAAAAAAAASSSPPAAGGGGGGGLFDLMSPDPQEDGG 56
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +3
Query: 27 PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 161
P L Q D PS++ SST S P HR L P R
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
>08_02_0104 +
12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 27.9 bits (59), Expect = 9.7
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +3
Query: 21 ESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSI 200
+SPG L R HD +L KSST + R E SR +KT+S+
Sbjct: 734 DSPGDSL---RDVHDISLNLKLSLDSEKSSTKENSVRRNLEDAVQKLSRGVSANRKTESV 790
Query: 201 D 203
+
Sbjct: 791 E 791
>02_04_0515 +
23582105-23583519,23583613-23583741,23583835-23583970,
23584051-23584139,23584236-23584347,23584427-23584533,
23584630-23584723
Length = 693
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = -1
Query: 346 GAGLAESG-KDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSP 218
G+G SG + M T EPRE+G ++ +++S SK+ R++SP
Sbjct: 92 GSGSERSGERPMKTGEPRENGVTRVSKEEAKMSPSKK--RKQSP 133
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 27.9 bits (59), Expect = 9.7
Identities = 34/111 (30%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Frame = +3
Query: 78 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDS-IDLRDPNGLRR-------- 230
S +PR+ R YS R R+ RD+R ++++ S D R P G R
Sbjct: 143 SPSPRRGRSRGRSYSRSRSRSYSRSQSPRRDSRNERRSRSPRDSRSPRGSPRDSRSPRGS 202
Query: 231 -RVSRF-ECETRLVKSHCLEPPDSRGSTVSISLPDSARPAPALEAFRHNPA 377
R SR + R +S P DSR S S P+ +P A R +PA
Sbjct: 203 PRDSRSPKGSPRDTQSPRGSPRDSRSPRRSASPPNGRNRSPTPNASR-SPA 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,874,347
Number of Sequences: 37544
Number of extensions: 439271
Number of successful extensions: 1300
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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