Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_E13
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.80 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   4.3  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   5.7  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   7.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   7.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   7.5  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   9.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   9.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 42  SLNRSQHDAALPSTTPRQERKSST 113
           ++N+ Q   +   TTP++ERK++T
Sbjct: 776 NVNKEQSPNSTKETTPKKERKTAT 799


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 556 SNAWRICFAMIGRADIEGSK 615
           S  WR+C A+  R + E S+
Sbjct: 101 SGLWRVCVAISSRMEYECSR 120


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 389 RTTGRSAECMNQMSETAVPLVLSS 460
           +  G+  +C N MSE  V ++L +
Sbjct: 170 KENGKEFDCHNYMSELTVDILLET 193


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 583 LRSKFAKRWIVHP 545
           +R K A  W++HP
Sbjct: 71  IRQKAAGHWVIHP 83


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 583 LRSKFAKRWIVHP 545
           +R K A  W++HP
Sbjct: 71  IRQKAAGHWVIHP 83


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 583 LRSKFAKRWIVHP 545
           +R K A  W++HP
Sbjct: 71  IRQKAAGHWVIHP 83


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 491 GKTNLSHDGLNPAHVPF*WVNNPTLG 568
           GK N      +PA  PF W ++ + G
Sbjct: 404 GKENYQTMSRDPARTPFQWDDSVSAG 429


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 491 GKTNLSHDGLNPAHVPF*WVNNPTLG 568
           GK N      +PA  PF W ++ + G
Sbjct: 404 GKENYQTMSRDPARTPFQWDDSVSAG 429


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,449
Number of Sequences: 438
Number of extensions: 3831
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)