BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_T7_E08 (811 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 126 4e-30 SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 122 5e-29 SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 40 6e-04 SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.4 SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 28 1.8 SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.5 >SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A |Schizosaccharomyces pombe|chr 2|||Manual Length = 292 Score = 126 bits (304), Expect = 4e-30 Identities = 60/91 (65%), Positives = 69/91 (75%) Frame = -2 Query: 630 REXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 451 RE RL++V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+ Sbjct: 119 REPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWY 178 Query: 450 LLAREVLRLRGVLPRDQRWDVVVDLFFYRXP 358 LLAREVLR+RG L R WDV+ DL+FYR P Sbjct: 179 LLAREVLRVRGTLSRSAPWDVMPDLYFYRDP 209 Score = 48.4 bits (110), Expect = 1e-06 Identities = 21/31 (67%), Positives = 22/31 (70%) Frame = -1 Query: 736 FGQRXVXKFXGHTGXTPIAGRFTPGXFTNQI 644 +G R V KF HTG T IAGRFTPG FTN I Sbjct: 84 YGHRAVLKFAAHTGATAIAGRFTPGNFTNYI 114 >SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein S0B|Schizosaccharomyces pombe|chr 1|||Manual Length = 287 Score = 122 bits (295), Expect = 5e-29 Identities = 59/91 (64%), Positives = 68/91 (74%) Frame = -2 Query: 630 REXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 451 RE RL+IV DP D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+ Sbjct: 120 REPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWY 179 Query: 450 LLAREVLRLRGVLPRDQRWDVVVDLFFYRXP 358 LLAREVLRLRG + R W+V+ DL+FYR P Sbjct: 180 LLAREVLRLRGNISRTTAWEVMPDLYFYRDP 210 Score = 51.2 bits (117), Expect = 2e-07 Identities = 22/32 (68%), Positives = 23/32 (71%) Frame = -1 Query: 739 PFGQRXVXKFXGHTGXTPIAGRFTPGXFTNQI 644 P+G R V KF HTG T IAGRFTPG FTN I Sbjct: 84 PYGHRAVLKFAAHTGATAIAGRFTPGNFTNYI 115 >SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|Schizosaccharomyces pombe|chr 1|||Manual Length = 263 Score = 39.5 bits (88), Expect = 6e-04 Identities = 19/60 (31%), Positives = 32/60 (53%) Frame = -2 Query: 618 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 439 L+++L+P ++ EA ++P I + +TD+ R V IP N S L+ LL+R Sbjct: 182 LMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241 >SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual Length = 539 Score = 28.3 bits (60), Expect = 1.4 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = -2 Query: 576 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 466 T A + + LC+ +S RF D+A+ NTK +H I Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110 >SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr 3|||Manual Length = 611 Score = 27.9 bits (59), Expect = 1.8 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = -3 Query: 422 VVCFPVTSAGMLWLICSSTVXPEESEKD 339 V+ FP TS+G LI S + PEE KD Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598 >SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces pombe|chr 3|||Manual Length = 561 Score = 26.2 bits (55), Expect = 5.5 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -2 Query: 468 IGLMWWLLAREVLRLRGVLPRDQRWD 391 IGL W L REV R + + R++ WD Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,802,203 Number of Sequences: 5004 Number of extensions: 51292 Number of successful extensions: 126 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 122 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 126 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 394431430 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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