Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_E08
(811 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) 147 8e-36
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35) 36 0.039
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037) 31 1.5
SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20) 30 1.9
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5) 30 2.6
SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032) 29 4.5
SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27) 29 4.5
SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15) 28 7.8
>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
Length = 328
Score = 147 bits (357), Expect = 8e-36
Identities = 66/91 (72%), Positives = 75/91 (82%)
Frame = -2
Query: 630 REXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 451
RE RLLIV DP DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN K HSIGLM+W
Sbjct: 117 REPRLLIVCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFW 176
Query: 450 LLAREVLRLRGVLPRDQRWDVVVDLFFYRXP 358
LLAREVLR+RG + R W+++ DL+FYR P
Sbjct: 177 LLAREVLRMRGSISRALPWEIMPDLYFYRDP 207
Score = 62.5 bits (145), Expect = 4e-10
Identities = 26/35 (74%), Positives = 29/35 (82%)
Frame = -1
Query: 739 PFGQRXVXKFXGHTGXTPIAGRFTPGXFTNQIQAA 635
P+GQR + K+ HTG TPIAGRFTPG FTNQIQAA
Sbjct: 81 PYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAA 115
>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1772
Score = 35.9 bits (79), Expect = 0.039
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +2
Query: 377 KSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDLVLHGIAMST-NLSGE---SVLHKA 544
K+TT RWS+G TP ++ H I L+ HG ST NL+ E VL++
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNEN 1453
Query: 545 ITGMLTY 565
G +TY
Sbjct: 1454 ELGTMTY 1460
>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
Length = 432
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = -2
Query: 606 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 511
LDP +HQPIT+ + I ++A TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147
>SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)
Length = 428
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -2
Query: 678 DVSHQVXLLTRSKLHXREXRLLIVLDPAQDHQPITEASYVNIPVIALC-NTDSPLRFVDI 502
++ +V +L +++ +D A H P + +Y NI +I L NT S + +D
Sbjct: 240 EIMQEVLAKLNRRLKRENRNIMLFMDNAPCHTPSLKNTYCNIKIIFLSKNTTSKTQPLDS 299
Query: 501 AIPCNTK 481
I N K
Sbjct: 300 GIIANWK 306
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -1
Query: 622 SSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHCYP 494
S+ DCI C+ PS F C+ +C T++C +C+P
Sbjct: 880 SANDCI-TCSDPSNALIGFTCKANCTPGQFKNTATRVCENCHP 921
>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
Length = 315
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 474 HSIGLMWWLLAREVLRLRGVLP 409
H G +WW+L E LR + VLP
Sbjct: 46 HDDGSVWWVLTSESLRAKAVLP 67
>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 198 SCFWSTPCSRRMVCPGTR*VEHNCRRTSRRHRSA 97
+C W+ P R+ PG R H T+R H +A
Sbjct: 904 TCSWALPAHYRVHVPGQRSASHEAFDTTRPHENA 937
>SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)
Length = 397
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 625 TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHC 500
TSSLD + PC+ S H+ + + C C+ +++ C C
Sbjct: 331 TSSLDTLAPCSF-SCHFACDVNTNQCICYYGYQMSDNKCKAC 371
>SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)
Length = 418
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 372 RTNQPQHPSAGHGEA-HHEASTLHVPTTTTSNQ*SGKTWCC 491
R QP H ++ + A HH A LH P +TS + W C
Sbjct: 176 RDGQPCHGASMNNFAYHHAADFLHYPPVSTSYMPAHPYWTC 216
>SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +2
Query: 365 R*KNKSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDL---VLHGIAMSTNLSGESVL 535
R N+ T ++ STP + N+ ++P EW ++ H + L+GES
Sbjct: 3 RGSNRRPTFKYKFGDSSTPFYSALKKQNDRSMRPWEWHEMKARYSHAQTLINALTGESKY 62
Query: 536 HKAITG 553
+TG
Sbjct: 63 EFTLTG 68
>SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1601
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 416 TPRSLNTSRANNHHIKPIEWEDLVLHGIAMSTNLSGESVLH 538
T +SLN S N + P EW + V+ G+ LSG ++L+
Sbjct: 864 TAQSLNVSVDNLKFLAPTEWRE-VIPGLKQEILLSGSNMLN 903
>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
Length = 487
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 367 VEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVGR-LGVAWDSNVHK 513
V Q+ + P +T HT+ T P HQ + +GR G DSNV +
Sbjct: 242 VTNQMRGHEPRSITYNHTSITAPLTTGYPDHQGSYMGRYAGSVADSNVSR 291
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,106,026
Number of Sequences: 59808
Number of extensions: 435310
Number of successful extensions: 972
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -