Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_E07
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    52   7e-08
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    52   9e-08
SPCC4B3.01 ||SPCP25A2.01c|thiosulfate sulfurtransferase|Schizosa...    27   2.3  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 52.4 bits (120), Expect = 7e-08
 Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
 Frame = -3

Query: 562 DPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNP 389
           D +FGS    ++ KKN+ LP+  ++N D+TRL+ SDEI+ +++A    RV RA  +K NP
Sbjct: 261 DSVFGSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNP 320

Query: 388 LTN 380
           L N
Sbjct: 321 LKN 323



 Score = 37.5 bits (83), Expect = 0.002
 Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 4/117 (3%)
 Frame = -1

Query: 618 PGGHFGRFVXWXQSAFGRXTPYSGHGRHHRNKRRTSTCPSQ--RWPTLTSHVFSSLMRSG 445
           PGGH GRFV W +SAFG      G        ++    P        +T  + S  ++S 
Sbjct: 242 PGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQSI 301

Query: 444 RSSVLPTNA*SVLHAN*TRSPI-XKAML-RLNPYAAVLKRKAILELRRRKNLKALAD 280
             +  P+      H    ++P+  KA+L RLNPYA     KA ++L   K  KA  +
Sbjct: 302 VKAAGPSRV-KRAHVQ-KKNPLKNKAVLARLNPYAKAY--KANVKLNTGKTPKAAGE 354


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 52.0 bits (119), Expect = 9e-08
 Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
 Frame = -3

Query: 562 DPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNP 389
           D +FGS    ++ KKN+ LP+  ++N D+TRL+ SDEI+ +++A    RV RA  +K NP
Sbjct: 261 DSVFGSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNP 320

Query: 388 LTN 380
           L N
Sbjct: 321 LKN 323



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 4/117 (3%)
 Frame = -1

Query: 618 PGGHFGRFVXWXQSAFGRXTPYSGHGRHHRNKRRTSTCPSQ--RWPTLTSHVFSSLMRSG 445
           PGGH GRFV W +SAFG      G        ++    P        +T  + S  ++S 
Sbjct: 242 PGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQSI 301

Query: 444 RSSVLPTNA*SVLHAN*TRSPI-XKAML-RLNPYAAVLKRKAILELRRRKNLKALAD 280
             +  P+      H    ++P+  KA+L RLNPYA     KA +++   K  KA  +
Sbjct: 302 VKAAGPSRV-KRAHVQ-KKNPLKNKAVLSRLNPYAKAY--KANVKINSEKTPKAAGE 354


>SPCC4B3.01 ||SPCP25A2.01c|thiosulfate
           sulfurtransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 298

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
 Frame = -3

Query: 619 SGRSFWTFRHXXSVRIRQXDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKS-----D 455
           S R FWTF+      +      F +WKT   + +      PK    +  +L K      D
Sbjct: 107 SPRVFWTFKVFGHEHVFLFPNAFNAWKTEGLELETGEPRTPKPVVYEGAKLNKDLVASFD 166

Query: 454 EIRKVLRAPN 425
           +I KV+ +P+
Sbjct: 167 DIVKVIESPD 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,126,213
Number of Sequences: 5004
Number of extensions: 33789
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)