Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_E07
         (786 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0578 + 4295386-4296489,4297394-4297507                           70   2e-12
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...    70   2e-12
09_06_0015 - 20234231-20234344,20234846-20234902,20234968-202351...    29   3.2  

>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 38/126 (30%), Positives = 62/126 (49%)
 Frame = -3

Query: 682 FXNXPRXGAPECXQAXLPEAGSGRSFWTFRHXXSVRIRQXDPLFGSWKTPSKQKKNFNLP 503
           F N P        +  L +   G     F        ++ + ++G+++ PS +KK F LP
Sbjct: 226 FRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGFILP 285

Query: 502 QPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNXQGDAETQSLRGRAEEESY 323
           +PKMAN DL R++ SDE++ V++  NK V R  ++ NPL N     +     G A + + 
Sbjct: 286 RPKMANADLGRIINSDEVQSVVKPLNKEVKRREKRKNPLKNVAAVLKLNPYFGTARKMAT 345

Query: 322 LRAAQK 305
           L  A +
Sbjct: 346 LAEAAR 351


>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 39/126 (30%), Positives = 60/126 (47%)
 Frame = -3

Query: 682 FXNXPRXGAPECXQAXLPEAGSGRSFWTFRHXXSVRIRQXDPLFGSWKTPSKQKKNFNLP 503
           F N P        +  L +   G     F        ++ D ++G + TP+ +KK F LP
Sbjct: 225 FRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKGFVLP 284

Query: 502 QPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNXQGDAETQSLRGRAEEESY 323
           +PKMAN DL+RL+ SDE++ V++  NK V     + NPL N     +     G A + + 
Sbjct: 285 RPKMANADLSRLINSDEVQSVVKPINKEVKLREARRNPLKNVAAVLKLNPYFGTARKMAA 344

Query: 322 LRAAQK 305
           L  A +
Sbjct: 345 LAEAAR 350


>09_06_0015 -
           20234231-20234344,20234846-20234902,20234968-20235111,
           20235581-20235745,20235817-20236005,20236086-20236326,
           20236412-20236512,20236704-20237241,20238101-20238132,
           20238677-20238760
          Length = 554

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
 Frame = -3

Query: 547 SWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNXQGD 368
           S ++PS      + P P +    L R  + DE    L+A  ++ ++A ++       +  
Sbjct: 367 SHRSPSLYPHVEHAPSPALTEQRLLREQQDDEYLASLQADQEKELKALQEAELRRLEETA 426

Query: 367 AETQSLRGRAEEESYLRAAQ--KEELEGS 287
           A   +L  + +EE   R  Q  +EELE S
Sbjct: 427 AREAALEKQKQEEEERRKKQLEEEELESS 455


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,309,078
Number of Sequences: 37544
Number of extensions: 285000
Number of successful extensions: 598
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)