Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_E07
         (786 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)                36   0.049
SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_40954| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06)             28   7.5  
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)                28   9.9  
SB_33997| Best HMM Match : Astacin (HMM E-Value=0)                     28   9.9  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score = 35.5 bits (78), Expect = 0.049
 Identities = 18/35 (51%), Positives = 22/35 (62%)
 Frame = -1

Query: 369 MLRLNPYAAVLKRKAILELRRRKNLKALADAEKSG 265
           MLRLNPYA   KR  +L + RR+  K  A A+K G
Sbjct: 264 MLRLNPYAKSAKRAEMLTVERRRAAKEAALAKKRG 298


>SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1718

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = -3

Query: 538 TPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLN 392
           TP++Q   F   + +++N D++RL  S+    + ++ N RVI+++   N
Sbjct: 802 TPTEQDAEFTANEAEVSNQDISRLSSSEPSPIIPKSINNRVIKSSALSN 850


>SB_40954| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 274

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = -1

Query: 492 WPTLTSHVFSSLMRSGRSSVLPTNA*SVLHAN*TRSPIXKAMLRLNPYAA-VLKRKAILE 316
           WP+LTS     +  +  S+   T A S   +  T SP+    +  +P AA   + +A  E
Sbjct: 190 WPSLTSPAIQPVAPATPSTT--TTAPSTADSKETTSPLVPEAVGASPEAADSAEDEASQE 247

Query: 315 LRRRKNLKALADAEKSGLKLSKRN 244
           LRRR+ L+     E  G K    N
Sbjct: 248 LRRRR-LERFMSGEAEGKKAEDTN 270


>SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1399

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -3

Query: 493 MANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNXQGDAETQSL 350
           +AN D +  +K+    K + AP KR++R T   N + +   D  +  +
Sbjct: 747 LANEDKSLNVKATRRSKPIAAPRKRILRKTSSRNKIVHGATDGNSSKV 794


>SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06)
          Length = 1425

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = -3

Query: 514  FNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNXQGDAETQSLRGRAE 335
            FN+  P   N   T ++  ++     R   KRV    +K   L     D  +Q+ RG  E
Sbjct: 1277 FNVMHPLTGNAKCTTIMVGEKDSSTYRKKRKRVFYGKQK-QELNRSDRDESSQTTRGLDE 1335

Query: 334  E 332
            E
Sbjct: 1336 E 1336


>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2848

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -3

Query: 463  KSDEIRKVLRAPNKRVIRATRKLNPLTNXQGDAETQSLRGRAEEESYLRAAQKEELE 293
            K  EI + L+   K VIR  R+ +     + D E +    + EE   +   ++EELE
Sbjct: 1531 KELEIERQLKIKEKEVIRLQRERDEERRRREDEEKRIQMEKVEELKRIEREKEEELE 1587


>SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)
          Length = 1566

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -1

Query: 375 KAMLRLNPYAAVLKRKA-ILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRR 205
           +A   +  Y A  +R A  +E+RR++  K L   EK   +L  R  AM+ ++ +ER R
Sbjct: 101 QAYQHIRDYEADKRRLADSIEIRRQEQAKTLE--EKKRQRLRSREAAMEEKRQKERLR 156


>SB_33997| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 507

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 540 RHHRNKRRTSTCPSQRWPTLT 478
           +HHR KR  ++  +Q+WP  T
Sbjct: 223 KHHRGKRAAASSDNQKWPRNT 243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,708,693
Number of Sequences: 59808
Number of extensions: 284523
Number of successful extensions: 931
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)