Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_E07
         (786 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    50   2e-06
Z81097-14|CAB03171.2|  221|Caenorhabditis elegans Hypothetical p...    30   2.2  
Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z92773-4|CAB07130.2|  584|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z81114-8|CAB97236.1|  584|Caenorhabditis elegans Hypothetical pr...    29   3.8  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
 Frame = -3

Query: 571 RQXDPLFGSWKTPSKQ-KKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKL 395
           ++ D ++G+    S Q KK +++P P MAN+D +R+++S+E+ K +RAP K  +      
Sbjct: 257 KKLDTIYGTTVANSSQLKKGWSVPLPIMANSDFSRIIRSEEVVKAIRAPKKNPVLPKVHR 316

Query: 394 NPL 386
           NPL
Sbjct: 317 NPL 319



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
 Frame = -1

Query: 618 PGGHFGRFVXWXQSAFGRXTPYSGHGRHHRNKRRTSTCPSQRWPTLTSHVFSSLMRSGR- 442
           PGGH GR + W +SAF +      +G    N  +     S   P + +  FS ++RS   
Sbjct: 241 PGGHLGRLIIWTESAFKKLDTI--YGTTVANSSQLKKGWSVPLPIMANSDFSRIIRSEEV 298

Query: 441 -SSVLPTNA*SVLHAN*TRSPIXKAML--RLNPYAAVLKRKAILELRR 307
             ++       VL     R+P+ K  L  +LNPYA++L++ +   +++
Sbjct: 299 VKAIRAPKKNPVL-PKVHRNPLKKRTLLYKLNPYASILRKASKANVKK 345


>Z81097-14|CAB03171.2|  221|Caenorhabditis elegans Hypothetical
           protein K07A1.10 protein.
          Length = 221

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = -3

Query: 577 RIRQXDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 425
           RIR     FG W  P   +    L Q +       ++ K DEI+K   A N
Sbjct: 168 RIRDIQEYFGYWMDPKDPRFEVMLQQKEAEEKKAVKMAKRDEIQKKRFAEN 218


>Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical
           protein F10F2.2 protein.
          Length = 1343

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = -3

Query: 466 LKSDEIRKVLRAPNKRVIRATRKLNPLTNXQGDAETQSLRGRAEEESYLRAAQKEELEGS 287
           +  DE+RK   AP+++V++    +  +    G A + S++G  E +    A Q+ + E  
Sbjct: 425 IDKDEVRKEPCAPHQKVVKIGGPVYRIGVGGGAASSVSVQGNRENQLDFAAVQRGDAEMG 484

Query: 286 G 284
           G
Sbjct: 485 G 485


>Z92773-4|CAB07130.2|  584|Caenorhabditis elegans Hypothetical
           protein W08E3.2 protein.
          Length = 584

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
 Frame = -3

Query: 538 TPSKQKKNFNLPQPKMA---NTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNXQGD 368
           TP +  +  + P P+     ++D  ++ +  + R+V      +V ++     P+   + +
Sbjct: 167 TPIQDGEEIDAPAPESTEEESSDARQVSRQQKDRRVSSTTRGKVGKSGTSRRPMKQRERE 226

Query: 367 AETQSLRGRAEEESYLRAAQKEELE 293
                 +G  EE+  +R AQK +++
Sbjct: 227 DTVDESKGEEEEDQGVRPAQKRQVK 251


>Z81114-8|CAB97236.1|  584|Caenorhabditis elegans Hypothetical
           protein W08E3.2 protein.
          Length = 584

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
 Frame = -3

Query: 538 TPSKQKKNFNLPQPKMA---NTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNXQGD 368
           TP +  +  + P P+     ++D  ++ +  + R+V      +V ++     P+   + +
Sbjct: 167 TPIQDGEEIDAPAPESTEEESSDARQVSRQQKDRRVSSTTRGKVGKSGTSRRPMKQRERE 226

Query: 367 AETQSLRGRAEEESYLRAAQKEELE 293
                 +G  EE+  +R AQK +++
Sbjct: 227 DTVDESKGEEEEDQGVRPAQKRQVK 251


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,000,609
Number of Sequences: 27780
Number of extensions: 212908
Number of successful extensions: 525
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)