Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_E07
         (786 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    62   4e-10
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    56   2e-08
At4g21820.1 68417.m03156 calmodulin-binding family protein conta...    31   0.66 
At3g04160.1 68416.m00440 expressed protein ; expression supporte...    28   6.1  

>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 32/86 (37%), Positives = 48/86 (55%)
 Frame = -3

Query: 562 DPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLT 383
           + ++GS++ PS++KK + LP+ KM N DL R++ SDEI+ V+    K   RA  K NPL 
Sbjct: 267 ESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLK 326

Query: 382 NXQGDAETQSLRGRAEEESYLRAAQK 305
           N     +       A+  S L  AQ+
Sbjct: 327 NLNVMLKLNPYAKTAKRMSLLAEAQR 352



 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 2/132 (1%)
 Frame = -1

Query: 618 PGGHFGRFVXWXQSAFGRXTPYSGHGRHHRNKRRTSTCPSQRW--PTLTSHVFSSLMRSG 445
           PGGH GRFV W +SAF +     G       K++    P  +     L   + S  ++S 
Sbjct: 248 PGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSV 307

Query: 444 RSSVLPTNA*SVLHAN*TRSPIXKAMLRLNPYAAVLKRKAILELRRRKNLKALADAEKSG 265
            + +      +VL  N  ++     ML+LNPYA   KR ++L   +R   K    A+K  
Sbjct: 308 VNPIKKDAKRAVLKKNPLKN--LNVMLKLNPYAKTAKRMSLLAEAQRVKAKKEKLAKKRK 365

Query: 264 LKLSKRNPAMKA 229
               +   A+KA
Sbjct: 366 TVTKEEALAIKA 377


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 25/61 (40%), Positives = 39/61 (63%)
 Frame = -3

Query: 562 DPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLT 383
           + ++GS++ PS++KK + LP+ KM N DL R++ SDE++ V+        RA  K NPL 
Sbjct: 268 ESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNPLK 327

Query: 382 N 380
           N
Sbjct: 328 N 328



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 2/132 (1%)
 Frame = -1

Query: 618 PGGHFGRFVXWXQSAFGRXTPYSGHGRHHRNKRRTSTCPSQRW--PTLTSHVFSSLMRSG 445
           PGGH GRFV W +SAF +     G       K++    P  +     L   + S  ++S 
Sbjct: 249 PGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSV 308

Query: 444 RSSVLPTNA*SVLHAN*TRSPIXKAMLRLNPYAAVLKRKAILELRRRKNLKALADAEKSG 265
            + +   +  +VL  N  ++     M +LNPYA   KR ++L    R   K     +K  
Sbjct: 309 VNPIKDGSKRAVLKKNPLKN--LNVMFKLNPYAKTAKRMSLLAEASRVKAKKEKLEKKRK 366

Query: 264 LKLSKRNPAMKA 229
           +   +   A+KA
Sbjct: 367 VVTKEEAQAIKA 378


>At4g21820.1 68417.m03156 calmodulin-binding family protein contains
           IQ calmodulin-binding motif, Pfam:PF00612
          Length = 1088

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
 Frame = -1

Query: 531 RNKRRTSTCPSQRWPTLTSHVFSSLMRSGRSSVLPTNA*SVLHAN*TRSPIXKAMLRLNP 352
           +  RRTS   S    +   H F++  ++ +SS       S++H+  +RS +  +  RL  
Sbjct: 29  KTPRRTSVVNSNISKSPYPHFFTASKQTPKSSSSNFRRPSMVHSYASRSKVSTSSRRLKA 88

Query: 351 Y---AAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNP 241
           +    +   RKA  EL + KNL++LA +    L     NP
Sbjct: 89  FELQQSQSSRKA--ELTKEKNLRSLAKSLTVWLNFLFENP 126


>At3g04160.1 68416.m00440 expressed protein ; expression supported
           by MPSS
          Length = 712

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 415 IRATRKLNPLTNXQGDAETQSLRGRAEEESYLRAAQKEELEGSG 284
           IRA R   PLT  Q  AE   +  +A+EE   R + +  ++  G
Sbjct: 445 IRAVRYAQPLTRYQRAAELGFMTAKADEERNRRCSYRPIIDHDG 488


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,690,913
Number of Sequences: 28952
Number of extensions: 207341
Number of successful extensions: 516
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)