Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_E06
         (857 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1U8U0 Cluster: FHA domain containing protein; n=9; Cor...    36   1.3  

>UniRef50_A1U8U0 Cluster: FHA domain containing protein; n=9;
           Corynebacterineae|Rep: FHA domain containing protein -
           Mycobacterium sp. (strain KMS)
          Length = 469

 Score = 35.9 bits (79), Expect = 1.3
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -2

Query: 418 DQGSSYGDGASRYGGEYQQPA-AQPPGDDYEY---TGGSGDGYQRA 293
           D G  YG G +   G Y  P   +P G DY+Y    GG G GY +A
Sbjct: 322 DYGQDYGRGYAEPAGGYGDPGYGEPAGRDYDYGQGAGGYGGGYGQA 367


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 492,205,407
Number of Sequences: 1657284
Number of extensions: 6468949
Number of successful extensions: 17036
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 16202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16997
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 75833093035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)