Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_E06
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    29   0.84 
SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu...    27   3.4  

>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 991

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = -2

Query: 415  QGSSYGDGASRYGGEYQQPAAQPPGDDYEYTGGSGDGYQRAS 290
            +G   G G    GG Y      P G+ Y    G G GYQR S
Sbjct: 942  RGGHEGYGGRSRGGGYSN--GPPAGNHYSSNRGKGYGYQRES 981


>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
           5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 228

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 127 RLLPLSSTGGAESDITRSDPRRQGIRKE*DSPSIP 23
           RLLP+SST  +      + P+   IR   DSP +P
Sbjct: 17  RLLPVSSTASSLKGSMMTIPKFTSIRTYTDSPEMP 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,770,105
Number of Sequences: 5004
Number of extensions: 20128
Number of successful extensions: 48
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)