Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_E06
(857 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0450 + 19172812-19172920,19173020-19173088,19173168-191732... 31 1.2
10_08_0217 - 15962192-15962884 31 1.6
10_08_0241 - 16111792-16112367 30 2.1
10_08_0221 - 15980370-15980927 29 3.6
10_08_0220 - 15977247-15977804 29 3.6
10_08_0219 - 15972061-15972110,15972411-15972632,15972673-15972955 29 3.6
07_03_1207 - 24881074-24881906,24882204-24882285,24882921-24882926 29 3.6
02_02_0498 - 10973243-10973345,10973850-10973882,10974104-109741... 29 3.6
10_08_0242 - 16120554-16121129 29 4.7
10_08_0218 - 15967064-15967906 29 6.3
01_06_0541 - 30088910-30089107,30089421-30089477,30089563-300897... 29 6.3
07_01_1021 + 8736032-8736106,8736336-8736374,8737362-8737493,873... 28 8.3
>12_02_0450 +
19172812-19172920,19173020-19173088,19173168-19173274,
19173874-19174365
Length = 258
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = -2
Query: 412 GSSYGDGASRYGGEYQQPAAQPPGDDYEYTGGSGDGYQ 299
G YG G YGG G Y GG G GYQ
Sbjct: 123 GGGYGGGGGGYGGGGYSGGGGYGGGGYSGGGGGGGGYQ 160
>10_08_0217 - 15962192-15962884
Length = 230
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = -2
Query: 412 GSSYGD--GASRYGGEYQQPAAQPPGDDYEYTGGSGDG 305
GS YG G +GG Y Q Q G Y GGSG G
Sbjct: 134 GSGYGQAGGYGPHGGAYAQGGGQGGGGGGGYNGGSGYG 171
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Frame = -2
Query: 412 GSSYGDGASR--YGGEYQQPAAQPPGDDYEYTGGSGDGYQRAS 290
GS YG S YGG Y Q G ++G G GY S
Sbjct: 175 GSGYGQAGSYGPYGGGYAHAGGQGGGGGGGHSGPGGHGYGSGS 217
>10_08_0241 - 16111792-16112367
Length = 191
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -2
Query: 415 QGSSYGDGASRYGGEYQQPAAQPPGDDYEYTGGSGDG 305
+GS G G+S Y G + G Y GGSG G
Sbjct: 52 KGSGVGSGSSNYYGAHASGGGGGGGGGYSQYGGSGSG 88
>10_08_0221 - 15980370-15980927
Length = 185
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Frame = -2
Query: 412 GSSYGD--GASRYGGEYQQPAAQPPGDDYEYTGGSGDGYQRAS 290
GS YG G YGG Y Q Q G +G G GY S
Sbjct: 131 GSGYGQAGGYGPYGGGYAQAGGQGGGGGGGQSGPGGSGYGSGS 173
>10_08_0220 - 15977247-15977804
Length = 185
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Frame = -2
Query: 412 GSSYGD--GASRYGGEYQQPAAQPPGDDYEYTGGSGDGYQRAS 290
GS YG G YGG Y Q Q G +G G GY S
Sbjct: 131 GSGYGQAGGYGPYGGGYAQAGGQGGGGGGGQSGPGGSGYGSGS 173
>10_08_0219 - 15972061-15972110,15972411-15972632,15972673-15972955
Length = 184
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Frame = -2
Query: 412 GSSYGD--GASRYGGEYQQPAAQPPGDDYEYTGGSGDGYQRAS 290
GS YG G YGG Y Q Q G +G G GY S
Sbjct: 121 GSGYGQAGGYGPYGGGYAQAGGQGGGGGGGQSGPGGSGYGSGS 163
>07_03_1207 - 24881074-24881906,24882204-24882285,24882921-24882926
Length = 306
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Frame = -2
Query: 418 DQGSSYGDGASRY-GGEYQQPA-----AQPPGDDYEYTG 320
DQ S YG G Y GG +Q PA A PP Y++ G
Sbjct: 241 DQSSYYGGGGYGYGGGAFQAPAGYYGVAPPPAAPYDHQG 279
>02_02_0498 -
10973243-10973345,10973850-10973882,10974104-10974166,
10975934-10976004,10976703-10976789,10976870-10976983,
10977395-10977508,10977784-10977844,10978608-10978923,
10979031-10979721,10979948-10980073,10980180-10980247,
10980314-10980449,10981109-10981238,10981266-10981382,
10981614-10981763,10982158-10982266,10982584-10982701,
10984143-10984168,10984219-10984256,10986267-10986373
Length = 925
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -2
Query: 193 SHSWAPGVVSVDQLVEGEDLGSRLLPLSSTGGAESDITRSD 71
SH+ A G+ V+ ++ SRLL SST ES R D
Sbjct: 487 SHASASGLSGVEMQIDRGQPSSRLLGSSSTSNHESSTARDD 527
>10_08_0242 - 16120554-16121129
Length = 191
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = -2
Query: 412 GSSYGDGASRYGGEYQQPAAQPPGDDYEYTGGSGDG 305
GS G G S Y G + G Y GGSG G
Sbjct: 53 GSGTGSGRSGYNGAHASGGGGGGGGGYSQYGGSGSG 88
>10_08_0218 - 15967064-15967906
Length = 280
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -2
Query: 412 GSSYGDGASRYGGEYQQPAAQPPGDDYEYTGGSGDG 305
GS YG G+ G Y Q + PG Y GG G G
Sbjct: 127 GSRYGSGS---GSGYGQAGSYGPGGAYAQGGGQGGG 159
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = -2
Query: 412 GSSYGDGASRYGGEYQQPAAQPPGDDYEYTGGSGDG 305
G YG G Y Q + PG Y GG G G
Sbjct: 200 GGQYGGSGHGSGSGYGQAGSYGPGGAYAQGGGQGGG 235
>01_06_0541 -
30088910-30089107,30089421-30089477,30089563-30089721,
30090639-30090777,30090863-30091247,30091612-30091816
Length = 380
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 376 GEYQQPAAQPPGDDYEYTGGSGDGYQ 299
GEY + +PP +YE G+G GY+
Sbjct: 151 GEYGDDSERPPRRNYERHSGTGRGYE 176
>07_01_1021 +
8736032-8736106,8736336-8736374,8737362-8737493,
8737848-8737892,8738450-8739157,8740679-8740807,
8741290-8741346,8742937-8742954
Length = 400
Score = 28.3 bits (60), Expect = 8.3
Identities = 18/39 (46%), Positives = 19/39 (48%)
Frame = -2
Query: 412 GSSYGDGASRYGGEYQQPAAQPPGDDYEYTGGSGDGYQR 296
G G GASR GGE A + G E GG G GY R
Sbjct: 281 GGGAGCGASRRGGE----ARRECGTAVEERGGGGAGYGR 315
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,320,839
Number of Sequences: 37544
Number of extensions: 206512
Number of successful extensions: 759
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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