Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_E02
         (794 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-l...    97   3e-19
UniRef50_Q5XL24 Cluster: pH-response transcription factor pacC/R...    38   0.29 
UniRef50_Q1QHE7 Cluster: OmpA/MotB precursor; n=2; Nitrobacter|R...    35   2.0  
UniRef50_A1CU10 Cluster: Putative uncharacterized protein; n=2; ...    35   2.0  
UniRef50_Q5KQ44 Cluster: Peptide-binding protein, putative; n=5;...    34   3.6  
UniRef50_UPI00015A4576 Cluster: hypothetical protein LOC10000270...    34   4.7  
UniRef50_A4R449 Cluster: Putative uncharacterized protein; n=1; ...    34   4.7  
UniRef50_UPI0000D5597B Cluster: PREDICTED: similar to Ataxin-1 (...    31   7.0  
UniRef50_Q71EB5 Cluster: 25kDa coat protein; n=1; Grapevine Red ...    33   8.3  
UniRef50_Q8DM37 Cluster: Tll0286 protein; n=1; Synechococcus elo...    33   8.3  
UniRef50_Q4EB49 Cluster: Reverse transcriptase polyprotein; n=1;...    33   8.3  

>UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-like
           latent virus|Rep: Coat protein - Bombyx mori Macula-like
           latent virus
          Length = 237

 Score = 97.5 bits (232), Expect = 3e-19
 Identities = 50/70 (71%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
 Frame = -3

Query: 717 MHQXPSP-GISXTSTRSSNPXIPYTNHPRLNIHFHQSPDAVXEGVRARXKASVVIRGSIS 541
           MHQ   P  +   +    +P IPYTNHPRLNIHFHQS DAV EGVRA  KASVVIRGSIS
Sbjct: 169 MHQATLPCDLGYINPIIKSP-IPYTNHPRLNIHFHQSADAVLEGVRAGVKASVVIRGSIS 227

Query: 540 VSHPLVTGHG 511
           VSHPLVTGHG
Sbjct: 228 VSHPLVTGHG 237


>UniRef50_Q5XL24 Cluster: pH-response transcription factor
           pacC/RIM101; n=15; Pezizomycotina|Rep: pH-response
           transcription factor pacC/RIM101 - Aspergillus giganteus
          Length = 678

 Score = 37.9 bits (84), Expect = 0.29
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = -1

Query: 683 HQPDHQIPXFHTPTTPDLTSISINPLTPX*KEFAPGXKPPLSSEAPSAYLTPSSLGMXKG 504
           H P  Q+P  H   T    ++  +P T       P   PP S+++ ++  +P S+     
Sbjct: 390 HSPPSQLPPSHATATTSAATMMSHPATHSPSTGTPALTPPSSAQSYTSGRSPISMSSAHR 449

Query: 503 VSPPY 489
           VSPP+
Sbjct: 450 VSPPH 454


>UniRef50_Q1QHE7 Cluster: OmpA/MotB precursor; n=2; Nitrobacter|Rep:
           OmpA/MotB precursor - Nitrobacter hamburgensis (strain
           X14 / DSM 10229)
          Length = 673

 Score = 35.1 bits (77), Expect = 2.0
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -1

Query: 662 PXFHTPTTPDLTSIS--INPLTPX*KEFAPGXKPPLSSEAPSAYLTPSSLGMXKGVSPP 492
           P   TP  PD+T  S    P TP     +P   PP  + AP+A   P+     K  +PP
Sbjct: 242 PGSTTPAAPDVTPTSPRATPATPSAPVASPAATPPSGAAAPAAATPPTGPAGTKAGTPP 300


>UniRef50_A1CU10 Cluster: Putative uncharacterized protein; n=2;
           Trichocomaceae|Rep: Putative uncharacterized protein -
           Aspergillus clavatus
          Length = 657

 Score = 35.1 bits (77), Expect = 2.0
 Identities = 22/62 (35%), Positives = 31/62 (50%)
 Frame = -1

Query: 707 HPPXGFRXHQPDHQIPXFHTPTTPDLTSISINPLTPX*KEFAPGXKPPLSSEAPSAYLTP 528
           +PP  +R HQP +Q+    + T P L S+     TP     APG  P  S+ AP +   P
Sbjct: 87  YPPTAYREHQP-YQVN--SSATAPPLASVPTPTPTPP----APGPPPAASASAPPSRAPP 139

Query: 527 SS 522
           S+
Sbjct: 140 SA 141


>UniRef50_Q5KQ44 Cluster: Peptide-binding protein, putative; n=5;
           Filobasidiella neoformans|Rep: Peptide-binding protein,
           putative - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 847

 Score = 34.3 bits (75), Expect = 3.6
 Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = -1

Query: 707 HP-PXGFRXHQ-PDHQIPXFHTPTTPDLTSISINPLTPX*KEFAPGXKPPLSSEAPSAYL 534
           HP P G+  H+ PD   P ++   T + T I   P  P    F PG  PP  S AP A +
Sbjct: 59  HPLPPGWSEHRAPDGITPYYYNAQTRESTYI--RPTFPP---FPPGTTPPTGSPAPGA-V 112

Query: 533 TPSSLG 516
           TP   G
Sbjct: 113 TPGGTG 118


>UniRef50_UPI00015A4576 Cluster: hypothetical protein LOC100002706
           (LOC100002706), mRNA; n=2; Danio rerio|Rep: hypothetical
           protein LOC100002706 (LOC100002706), mRNA - Danio rerio
          Length = 455

 Score = 33.9 bits (74), Expect = 4.7
 Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = -1

Query: 707 HPPXGFRX-HQPDHQIPXFHTPTTPDLTSISINPLTPX*KEFAPGXKPPLSSEAPSAYLT 531
           HPP G    H   +Q P   TP  P      I+P+ P      PG  PP+S   P  Y  
Sbjct: 341 HPPQGSATPHMIYNQPPPMSTPPPPGHI---ISPMPPFMNHPPPGPIPPVS---PHHY-N 393

Query: 530 PSSLGMXKG-VSPPYFQ 483
           P+S+   +G +SPP+ Q
Sbjct: 394 PNSMPQDQGTLSPPFSQ 410


>UniRef50_A4R449 Cluster: Putative uncharacterized protein; n=1;
            Magnaporthe grisea|Rep: Putative uncharacterized protein
            - Magnaporthe grisea (Rice blast fungus) (Pyricularia
            grisea)
          Length = 4052

 Score = 33.9 bits (74), Expect = 4.7
 Identities = 19/75 (25%), Positives = 35/75 (46%)
 Frame = -3

Query: 246  QLLPSIPXLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGAYVKS* 67
            Q L  +  LY  +     + +T  L   + ASLPS +++  L+   H++ DSF   +   
Sbjct: 2656 QSLDEVDRLYHELHHAQFNLETGELVKMVLASLPSGQVHHLLIGYHHINMDSFSMAILMS 2715

Query: 66   SLILHSFGLLVSSRS 22
             L+    G ++  R+
Sbjct: 2716 ELLQLYAGTVLEPRT 2730


>UniRef50_UPI0000D5597B Cluster: PREDICTED: similar to Ataxin-1
           (Spinocerebellar ataxia type 1 protein homolog); n=1;
           Tribolium castaneum|Rep: PREDICTED: similar to Ataxin-1
           (Spinocerebellar ataxia type 1 protein homolog) -
           Tribolium castaneum
          Length = 473

 Score = 31.1 bits (67), Expect(2) = 7.0
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 653 HTPTTPDLTSISINPLTPX*KEFAPGXK-PPLSSEAPSAYLTPSSLGMXKGVSPP 492
           H P  P  T++  NP TP  +   P    PPL + +P+   TP+++     +SPP
Sbjct: 122 HLPHFPQFTTMYQNPYTPIIRSTFPTTSLPPLETYSPT---TPTAITSSTFLSPP 173



 Score = 21.0 bits (42), Expect(2) = 7.0
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -1

Query: 704 PPXGFRXHQPDHQIPXFHTPTT 639
           PP G R     H +  + +PT+
Sbjct: 72  PPNGMRLAPSQHSLSKYPSPTS 93


>UniRef50_Q71EB5 Cluster: 25kDa coat protein; n=1; Grapevine Red
           Globe virus|Rep: 25kDa coat protein - Grapevine Red
           Globe virus
          Length = 235

 Score = 33.1 bits (72), Expect = 8.3
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
 Frame = -3

Query: 702 SPGISXTSTRSSNPXIP----YTNHPRLNIHFHQSPDAVXEGVRAR-XKASVVIRGSISV 538
           +P I     RS+NP +     Y N P+L + FH++ DA    V       S+VIRG +  
Sbjct: 165 NPIILPADLRSTNPVVKDTVSYNNTPKLTVAFHKNTDAPAVSVTTPVIYGSIVIRGVVRC 224

Query: 537 S 535
           S
Sbjct: 225 S 225


>UniRef50_Q8DM37 Cluster: Tll0286 protein; n=1; Synechococcus
           elongatus|Rep: Tll0286 protein - Synechococcus elongatus
           (Thermosynechococcus elongatus)
          Length = 158

 Score = 33.1 bits (72), Expect = 8.3
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = -2

Query: 463 LRALLVVIPRILRSPPPTHPLIEDVVMATNQAIIDYKVKIADNNLVTHKELALKVSSIIG 284
           L  LL+VIP  L   P +H +I  +  A NQ ++  +  + DN   T + +       + 
Sbjct: 8   LLLLLLVIPLWLAVSPRSHAMIRTIEEAPNQVVVQSRHPLRDNRGFTWQVILFSRPDQLQ 67

Query: 283 TRVYVFDPSCYFSTP 239
            R+  F    +F  P
Sbjct: 68  LRLVGFPEQYHFRHP 82


>UniRef50_Q4EB49 Cluster: Reverse transcriptase polyprotein; n=1;
           Wolbachia endosymbiont of Drosophila ananassae|Rep:
           Reverse transcriptase polyprotein - Wolbachia
           endosymbiont of Drosophila ananassae
          Length = 607

 Score = 33.1 bits (72), Expect = 8.3
 Identities = 18/71 (25%), Positives = 37/71 (52%)
 Frame = -3

Query: 306 SRFLLS*APESTSSIPLATFQLLPSIPXLYDNIRTVLKDNKTALLSASIQASLPSSEIYR 127
           S++L+     +  +I +  +++L + P     ++T++ DN+ +  SA  ++ L  S I  
Sbjct: 406 SKYLVVKEITNKKNIDIKVYEILQTFP----QVKTIMTDNEPSFTSAQFKSFLQRSGISI 461

Query: 126 QLVDPRHVSSD 94
              DPRH  S+
Sbjct: 462 HYADPRHSLSN 472


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 686,183,519
Number of Sequences: 1657284
Number of extensions: 13137999
Number of successful extensions: 36097
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 34199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35980
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67908372675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)