Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_E02
(794 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 29 0.77
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 26 5.4
SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual 26 5.4
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 26 5.4
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran... 26 5.4
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 26 7.1
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy... 25 9.4
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 25 9.4
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 25 9.4
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 9.4
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 29.1 bits (62), Expect = 0.77
Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = -1
Query: 680 QPDHQ-IPXFHTPTTPDLTSISINPLTP-X*KEFAPGXKPPLSSEAPSAYLTPSSLGMXK 507
QP HQ FHTPT P T +S +P + PLS +A S LT S L +
Sbjct: 130 QPKHQEFHLFHTPTIPRTTQLSSKTSSPIVIPDDNEQVASPLSKKAAS--LTSSPLKDFQ 187
Query: 506 GVSPPYFQVNDESQA 462
SPP V +S +
Sbjct: 188 S-SPPLSTVLQKSHS 201
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 100 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQ 222
R +A Y+ + LGG++ S+ EK F + N DV+ +
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAK 152
>SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 132 YRQLVDPRHVSSDSFGAYVKS*SLILHSFGLLV 34
YRQLVD R ++ D F ++ K+ LH + V
Sbjct: 34 YRQLVDGRELTLDDFISHAKALRTHLHRLDINV 66
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 466 KLRALLVVIPRILRSPPPTHPLIEDV 389
KLR++L I ++LR P P PL+ +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130
>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
transcription factor Ams2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 697
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 265 DPSCYFSTPPFDTVXVRQHQDGS 197
D CYF TPP T +Q Q S
Sbjct: 579 DLECYFRTPPKPTTLQKQQQSPS 601
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 142 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 44
L++L +G SPC RL L +++P FW
Sbjct: 21 LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50
>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -2
Query: 331 LVTHKELALKVSSIIGTRVYVFDPSCY 251
+V H E LKV II T Y D S Y
Sbjct: 37 VVKHHEEFLKVCDIISTFTYQLDASIY 63
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 471 ITSFAPY*SSFHAYSAPLLQLTPSSKTSS 385
+ SF PY S F A P L ++PS+ +S
Sbjct: 302 LQSFHPYESLFSAGQPPSLPISPSTSQNS 330
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -2
Query: 355 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTV 224
K K+ D V K + +S T+ +V + YF PF+ V
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKV 651
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 115 IYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVV 216
++Q A+ LG RS RC KSSF+ + DVV
Sbjct: 33 LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,397
Number of Sequences: 5004
Number of extensions: 52186
Number of successful extensions: 147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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