Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_E02
         (794 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52)                   31   1.4  
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  

>SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52)
          Length = 516

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = -1

Query: 647 PTTPDLTSISINPLTPX*KEFAPGXKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQVNDES 468
           P TP   S S  P++P  +   P  +P     +PS  LT +       ++P + +V++E 
Sbjct: 51  PKTPSEPSDSPGPMSPEPEIMTPTPEPSPKHRSPSPKLTKTPTPPSWSLTPLHDEVDEEE 110

Query: 467 QAS 459
           + S
Sbjct: 111 EGS 113


>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2437

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -1

Query: 587  FAPGXKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQVNDESQASRLISR 444
            FA     P SS++PSA  +P+S       SP  F  + E +   +IS+
Sbjct: 1096 FATTTMSPTSSQSPSAVTSPTSPRSPSNPSPASFGFHSEDEPVTMISK 1143


>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = -1

Query: 653 HTPTTPDLTSISINPLTPX*KEFAPGXKPPLSSEAPSAYLTPSSLGMXKGVSPP 492
           +TP+TP   S+   P TP           P +   PS   TPS+    K  S P
Sbjct: 277 NTPSTPSTPSMPSTPSTPSTPSTPSTPSTPSAPSTPSTPSTPSTPSTPKTPSTP 330



 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = -1

Query: 653 HTPTTPDLTSISINPLTPX*KEFAPGXKPPLSSEAPSAYLTPSSLGMXKGVSPP 492
           +TP+TP   S+   P TP           P +   PS   TPS+    K  S P
Sbjct: 827 NTPSTPSTPSMPSTPSTPSTPSTPSTPSTPSAPSTPSTPSTPSTPSTPKTPSTP 880



 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/53 (32%), Positives = 20/53 (37%)
 Frame = -1

Query: 650 TPTTPDLTSISINPLTPX*KEFAPGXKPPLSSEAPSAYLTPSSLGMXKGVSPP 492
           TP+TP LT     P TP           P +   PS   TPS+       S P
Sbjct: 445 TPSTPSLTHTPSTPSTPSTPSTPSTPSTPSTPSTPSTPSTPSTPSTPSTSSTP 497



 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = -1

Query: 650  TPTTPDLTSISINPLTPX*KEFAPGXKPPLSSEAPSAYLTPSSLGMXKGVS 498
            TP+TP   S    P TP           P +   PS     +SLGM + ++
Sbjct: 852  TPSTPSAPSTPSTPSTPSTPSTPKTPSTPCTPNTPSTNRKSTSLGMQENIA 902



 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = -1

Query: 650 TPTTPDLTSISINPLTPX*KEFAPGXKPPLSSEAPSAYLTPSSL 519
           TP+TP   S    P TP           P +   PS   TPS+L
Sbjct: 529 TPSTPSTPSTPSTPSTPSTPSMPSTPSTPSTPSTPSTPSTPSTL 572



 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -1

Query: 653 HTPTTPDLTSISINPLTPX*KEFAPGXKPPLSSEAPSAYLTPSSLGMXKGVSPP 492
           +TP+TP   S    P+TP      P    P +  AP   +TPS+L      S P
Sbjct: 698 NTPSTPSTPSTPSTPITPG----TP--STPSTPSAPGTPITPSTLSTPSTPSTP 745


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,913,113
Number of Sequences: 59808
Number of extensions: 410614
Number of successful extensions: 1132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)