Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_E02
         (794 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68222-9|CAE46689.1|  631|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z68222-8|CAC70146.2|  613|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z68217-11|CAE46673.1|  631|Caenorhabditis elegans Hypothetical p...    29   3.8  
Z68217-10|CAC70099.2|  613|Caenorhabditis elegans Hypothetical p...    29   3.8  
Z68217-4|CAA92467.2|  499|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF273780-1|AAG15129.1|  509|Caenorhabditis elegans nuclear recep...    29   3.8  
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical...    28   8.9  
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    28   8.9  
AF100656-3|AAF99968.1|  265|Caenorhabditis elegans Hypothetical ...    28   8.9  

>Z68222-9|CAE46689.1|  631|Caenorhabditis elegans Hypothetical
           protein F58G6.5c protein.
          Length = 631

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -3

Query: 273 TSSIPLATFQLLPSIPXLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVD 115
           TSS+    FQ +P I     +   +++DN   ++  S  A+L    + R L+D
Sbjct: 264 TSSVNSYNFQNIPGIVSRSFSENLIMRDNSVPVMETSQSAALSHVPLVRYLID 316


>Z68222-8|CAC70146.2|  613|Caenorhabditis elegans Hypothetical
           protein F58G6.5b protein.
          Length = 613

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -3

Query: 273 TSSIPLATFQLLPSIPXLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVD 115
           TSS+    FQ +P I     +   +++DN   ++  S  A+L    + R L+D
Sbjct: 246 TSSVNSYNFQNIPGIVSRSFSENLIMRDNSVPVMETSQSAALSHVPLVRYLID 298


>Z68217-11|CAE46673.1|  631|Caenorhabditis elegans Hypothetical
           protein F58G6.5c protein.
          Length = 631

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -3

Query: 273 TSSIPLATFQLLPSIPXLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVD 115
           TSS+    FQ +P I     +   +++DN   ++  S  A+L    + R L+D
Sbjct: 264 TSSVNSYNFQNIPGIVSRSFSENLIMRDNSVPVMETSQSAALSHVPLVRYLID 316


>Z68217-10|CAC70099.2|  613|Caenorhabditis elegans Hypothetical
           protein F58G6.5b protein.
          Length = 613

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -3

Query: 273 TSSIPLATFQLLPSIPXLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVD 115
           TSS+    FQ +P I     +   +++DN   ++  S  A+L    + R L+D
Sbjct: 246 TSSVNSYNFQNIPGIVSRSFSENLIMRDNSVPVMETSQSAALSHVPLVRYLID 298


>Z68217-4|CAA92467.2|  499|Caenorhabditis elegans Hypothetical
           protein F58G6.5a protein.
          Length = 499

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -3

Query: 273 TSSIPLATFQLLPSIPXLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVD 115
           TSS+    FQ +P I     +   +++DN   ++  S  A+L    + R L+D
Sbjct: 132 TSSVNSYNFQNIPGIVSRSFSENLIMRDNSVPVMETSQSAALSHVPLVRYLID 184


>AF273780-1|AAG15129.1|  509|Caenorhabditis elegans nuclear receptor
           NHR-34 protein.
          Length = 509

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -3

Query: 273 TSSIPLATFQLLPSIPXLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVD 115
           TSS+    FQ +P I     +   +++DN   ++  S  A+L    + R L+D
Sbjct: 142 TSSVNSYNFQNIPGIVSRSFSENLIMRDNSVPVMETSQSAALSHVPLVRYLID 194


>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18b protein.
          Length = 1459

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 566  PLSSEAPSAYLTPSSLGMXKGVSPP 492
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18a protein.
          Length = 1456

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 566  PLSSEAPSAYLTPSSLGMXKGVSPP 492
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


>AF100656-3|AAF99968.1|  265|Caenorhabditis elegans Hypothetical
           protein F49F1.1 protein.
          Length = 265

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -1

Query: 665 IPXFHTPTTPDLTSISINPLTPX*KEFAPGXKPPLSSEAPS 543
           +P   T  TP+LT++++ P+T   K       P  +++ P+
Sbjct: 173 VPLVLTTLTPELTTVTVEPITSTLKPTTTTITPTTTTKLPT 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,359,525
Number of Sequences: 27780
Number of extensions: 298885
Number of successful extensions: 857
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)