Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_E02
(794 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g47170.1 68416.m05122 transferase family protein low similari... 35 0.072
At2g24980.1 68415.m02987 proline-rich extensin-like family prote... 35 0.072
At5g06630.1 68418.m00749 proline-rich extensin-like family prote... 32 0.38
At2g42460.1 68415.m05253 meprin and TRAF homology domain-contain... 29 2.7
At5g49080.1 68418.m06074 proline-rich extensin-like family prote... 28 8.2
At5g06640.1 68418.m00750 proline-rich extensin-like family prote... 28 8.2
At4g22360.1 68417.m03232 SWIB complex BAF60b domain-containing p... 28 8.2
At4g00890.1 68417.m00120 proline-rich family protein contains pr... 28 8.2
At1g64900.1 68414.m07357 cytochrome P450, putative similar to cy... 28 8.2
At1g61520.1 68414.m06931 chlorophyll A-B binding protein / LHCI ... 28 8.2
At1g06170.2 68414.m00649 basic helix-loop-helix (bHLH) family pr... 28 8.2
At1g06170.1 68414.m00648 basic helix-loop-helix (bHLH) family pr... 28 8.2
>At3g47170.1 68416.m05122 transferase family protein low similarity
to 10-deacetylbaccatin III-10-O-acetyl transferase Taxus
cuspidata GI:6746554; contains Pfam profile PF02458
transferase family
Length = 468
Score = 34.7 bits (76), Expect = 0.072
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = -2
Query: 472 NHKLRALLVVIPRILRSPP-PTHPLIEDVVMATNQAIIDYK-VKIADNNLVTHKELALKV 299
N K LV + + SP PT ++ +++ T++ I K + I D NL KE +K+
Sbjct: 222 NDKNNPKLVDVEKDCSSPDTPTEDMVREILNITSEDITKLKNIIIEDENLTNEKEKNMKI 281
Query: 298 SSIIGTRVYVFDPSC 254
+++ YV+ C
Sbjct: 282 TTVEVLAAYVWRARC 296
>At2g24980.1 68415.m02987 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 559
Score = 34.7 bits (76), Expect = 0.072
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = -1
Query: 656 FHTPTTPDLTSISINPLTPX*KEFAPGXKPPLSSEAPSAYLTPSSLGMXKGVSPPY 489
+ +P TP S S P ++AP KP + S P Y TPS K PPY
Sbjct: 25 YSSPQTPSYNSPSYEHKGP---KYAPHPKPYVKSSPPPQYYTPSPKVNYKSPPPPY 77
>At5g06630.1 68418.m00749 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 440
Score = 32.3 bits (70), Expect = 0.38
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = -1
Query: 656 FHTPTTPDLTSISINPLTPX*KEFAPGXKPPLSSEAPSAYLTPSSLGMXKGVSPPY 489
+ +P TP S S P ++AP KP + S P Y TPS K PPY
Sbjct: 31 YSSPHTPAYDSPSYEHKGP---KYAPHPKPYVYSSPPPPYYTPSPKVNYKSPPPPY 83
>At2g42460.1 68415.m05253 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 441
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -2
Query: 445 VIPRILRSPPPTHPLIEDVVMATNQAIIDYKVKIADNNLVTHKEL 311
V P++L PL E+ + N+ II +VK+A+ +T KE+
Sbjct: 273 VEPKMLSFKDYASPLQEEGFLENNKLIIRVEVKVAEEGYLTGKEM 317
>At5g49080.1 68418.m06074 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 609
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = -1
Query: 656 FHTPTTPDLTSISINPLTPX*KEFAPGXKPPLSSEAPSAYLTPSSLGMXKGVSPPY 489
+ +P TP S +P ++ P KP + + P Y +PS K PPY
Sbjct: 25 YSSPQTPQYNFPSHQHKSP---KYTPHSKPYIYNSPPPPYYSPSPKVNYKSPPPPY 77
>At5g06640.1 68418.m00750 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 689
Score = 27.9 bits (59), Expect = 8.2
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Frame = -1
Query: 704 PPXGFRXHQPDHQIPX----FHTPTTPDLTSISINPL-TPX*KEFAPGXKPP-LSSEAPS 543
PP + H P + P + +P P + S P +P K PP + S P
Sbjct: 530 PPYVYSSHPPPYYSPSPKVNYKSPPPPYVYSSPPPPYYSPSPKVNYKSPPPPYVYSSPPP 589
Query: 542 AYLTPSSLGMXKGVSPPY 489
Y +PS + K PPY
Sbjct: 590 PYYSPSPMVDYKSTPPPY 607
>At4g22360.1 68417.m03232 SWIB complex BAF60b domain-containing
protein contains Pfam profile PF02201: BAF60b domain of
the SWIB complex
Length = 385
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 714 HQXPSPGI-SXTSTRSSNPXIPYTNHPRLNIH 622
HQ PS + S +S + S+P P ++H + N+H
Sbjct: 59 HQNPSASVASASSVQQSHPPPPPSSHQQQNLH 90
>At4g00890.1 68417.m00120 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 431
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 680 QPDHQIPXFHTPTTPDLTSISINPLTPX*KE 588
Q Q P FH + P+ S+ ++PL+P KE
Sbjct: 41 QSPPQSPLFHPQSPPEPKSLPLSPLSPKSKE 71
>At1g64900.1 68414.m07357 cytochrome P450, putative similar to
cytochrome p450 GI:438240 from [Solanum melongena]
Length = 506
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/60 (25%), Positives = 34/60 (56%)
Frame = -3
Query: 261 PLATFQLLPSIPXLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGA 82
P+ T ++ S P ++ R++ ++ +L+ ++ A P + ++VD ++SS S+GA
Sbjct: 67 PIVTLRIT-SRPAIFVADRSLT--HEALVLNGAVYADRPPPAVISKIVDEHNISSGSYGA 123
>At1g61520.1 68414.m06931 chlorophyll A-B binding protein / LHCI
type III (LHCA3.1) nearly identical to PSI type III
chlorophyll a/b-binding protein GI:430947; contains Pfam
profile: PF00504 chlorophyll A-B binding protein;
similar to PSI type III chlorophyll a/b-binding protein
GI:430947 from [Arabidopsis thaliana]
Length = 273
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 487 K*GGETPLXMPSDEGVRYADGASDDNGGFXPGANSFXYGVRGLME 621
K G PL S + + Y DG+ + GF P S G G +E
Sbjct: 48 KQGANRPLWFASSQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIE 92
>At1g06170.2 68414.m00649 basic helix-loop-helix (bHLH) family
protein contains Pfam profile:PF00010 helix-loop-helix
DNA-binding domain
Length = 420
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = -2
Query: 550 LHQRISPPRHWA----WXKGFRPLIFK*MMNHKLRALLVVIPRILRSPPP-THPLIEDVV 386
+HQ + P + W G++ + NH LL ++ S PP +P I+D++
Sbjct: 91 MHQTLQDPSYAQQSNHWDNGYQDFV-NLGPNHTTPDLLSLLQLPRSSLPPFANPSIQDII 149
Query: 385 MATNQAIIDY 356
M T+ ++ Y
Sbjct: 150 MTTSSSVAAY 159
>At1g06170.1 68414.m00648 basic helix-loop-helix (bHLH) family
protein contains Pfam profile:PF00010 helix-loop-helix
DNA-binding domain
Length = 420
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = -2
Query: 550 LHQRISPPRHWA----WXKGFRPLIFK*MMNHKLRALLVVIPRILRSPPP-THPLIEDVV 386
+HQ + P + W G++ + NH LL ++ S PP +P I+D++
Sbjct: 91 MHQTLQDPSYAQQSNHWDNGYQDFV-NLGPNHTTPDLLSLLQLPRSSLPPFANPSIQDII 149
Query: 385 MATNQAIIDY 356
M T+ ++ Y
Sbjct: 150 MTTSSSVAAY 159
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,906,956
Number of Sequences: 28952
Number of extensions: 300528
Number of successful extensions: 980
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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