Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_E01
         (795 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain...    30   1.5  
At3g53440.2 68416.m05898 expressed protein                             30   2.0  
At3g53440.1 68416.m05897 expressed protein                             30   2.0  
At5g45050.2 68418.m05524 disease resistance protein-related simi...    29   3.6  
At5g45050.1 68418.m05523 disease resistance protein-related simi...    29   3.6  
At1g27720.1 68414.m03388 transcription initiation factor IID (TF...    29   3.6  
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela...    29   4.7  

>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein
          Length = 564

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +3

Query: 117 KSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSH 290
           K S +  +PR R  LY D  +  + + K+T S+D+   NG +   S+ E   R+ + H
Sbjct: 142 KESQEVIKPRKRMRLYGDGGAVSSHLHKETSSVDV---NGFQVLPSQAESVKRIFERH 196


>At3g53440.2 68416.m05898 expressed protein
          Length = 512

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = +3

Query: 114 RKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC 293
           RKS+    +P  R+     L++RD++VK + D     +P    RR        RLV S  
Sbjct: 4   RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63

Query: 294 LEPPDSRGSTVSIS 335
               DSR   ++IS
Sbjct: 64  SPIEDSRSKKLNIS 77


>At3g53440.1 68416.m05897 expressed protein
          Length = 512

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = +3

Query: 114 RKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC 293
           RKS+    +P  R+     L++RD++VK + D     +P    RR        RLV S  
Sbjct: 4   RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63

Query: 294 LEPPDSRGSTVSIS 335
               DSR   ++IS
Sbjct: 64  SPIEDSRSKKLNIS 77


>At5g45050.2 68418.m05524 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1344

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 475  CSVXRGTAVSDIWFMHS-AERPVVRSYHPRDY 383
            C V RG+  SD+W      ++P+  S +PR Y
Sbjct: 1143 CVVDRGSRSSDLWVWRKYGQKPIKSSPYPRSY 1174


>At5g45050.1 68418.m05523 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1372

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 475  CSVXRGTAVSDIWFMHS-AERPVVRSYHPRDY 383
            C V RG+  SD+W      ++P+  S +PR Y
Sbjct: 1171 CVVDRGSRSSDLWVWRKYGQKPIKSSPYPRSY 1202


>At1g27720.1 68414.m03388 transcription initiation factor IID
           (TFIID) component TAF4 family protein contains Pfam
           profile PF05236: Transcription initiation factor TFIID
           component TAF4 family
          Length = 682

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -1

Query: 354 PSRIRPRICSLWSPESREALNNVTLLVAFRIQNARRD-VEAHLDRGDRCYRFFS*HVHHG 178
           PSR + +IC   S ES E  N+VT +    ++   +  +++   + DR  + +   + HG
Sbjct: 419 PSRKKQKICGTSSDESIEKFNDVTAVSGINLREEEKQLLDSGPKKNDRVSKAYR-RLVHG 477

Query: 177 SEGPDITQ 154
            E   + Q
Sbjct: 478 EEERTLLQ 485


>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
           low similarity to nuclear matrix constituent protein 1
           (NMCP1) [Daucus carota] GI:2190187
          Length = 1042

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 22/74 (29%), Positives = 36/74 (48%)
 Frame = +3

Query: 108 QERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKS 287
           +E K+S D S+  H  E    + S  A  KK+ +S+  +D    +  +S  E     +++
Sbjct: 95  EEIKASVDESDLTHMREKSAYV-SALAEAKKREESLK-KDVGIAKECISSLEKTLHEMRA 152

Query: 288 HCLEPPDSRGSTVS 329
            C E   S GST+S
Sbjct: 153 ECAETKVSAGSTMS 166


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,043,796
Number of Sequences: 28952
Number of extensions: 302064
Number of successful extensions: 763
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)