Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_D24
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      62   9e-11
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    49   7e-07
SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual      37   0.004
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr...    27   2.4  
SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...    27   2.4  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   3.1  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 62.1 bits (144), Expect = 9e-11
 Identities = 51/202 (25%), Positives = 91/202 (45%), Gaps = 3/202 (1%)
 Frame = -3

Query: 762 SDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNIC 583
           S+I++N+ + I++ GN+ G +RK H+     F+    + +  +  P+F T +GK+ V IC
Sbjct: 96  SNIIYNSCIYITENGNLGGVYRKVHL-----FDTERKHFKKGSDFPIFETSFGKLGVMIC 150

Query: 582 FGRHHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYM--WNVEARNAAITNCYFTAAINRV 409
           +         +   NGA+++      +A    + Y   W++  +  A  NC    A NRV
Sbjct: 151 WDTAFPEVARIHALNGADLL-----VVATNWENPYSDDWDLVTKARAFENCIPLVAANRV 205

Query: 408 GYEEFPNEFTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDLNLNRQ 229
           G +E  +                F+G S   GP G     L   ++G++   VDL+  + 
Sbjct: 206 GTDEKLS----------------FFGHSKIIGPTGKVIKALDEEKEGVISYTVDLDDAKP 249

Query: 228 IRDRRCYYMTQRL-DMYVNSLS 166
           +R     +   R+ D+Y   LS
Sbjct: 250 LRKNYYTFFEDRMPDLYKRLLS 271


>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 49.2 bits (112), Expect = 7e-07
 Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
 Frame = -3

Query: 753 LWNTAVVISDTGNVIGKHRKNH-----IPRVGDFNESNYYMEGNTGHPVFATRYGKIAVN 589
           L+NTA+V   +G +I  HRK H     IP    F ES+    G+    +  T YGK  + 
Sbjct: 135 LYNTAMVFDPSGKLIAVHRKIHLFDIDIPGGVSFRESDSLSPGD-AMTMVDTEYGKFGLG 193

Query: 588 ICFGRHHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYMWNVEARNAAITNCYFTA 424
           IC+        M+  +NG  ++  P A     G     W + AR  A+ N  F A
Sbjct: 194 ICYDIRFPELAMIAARNGCSVMIYPGAFNLSTG--PLHWELLARARAVDNEMFVA 246


>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 276

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 51/186 (27%), Positives = 72/186 (38%), Gaps = 9/186 (4%)
 Frame = -3

Query: 753 LWNTAVVISDT-GNVIGKHRKNHIPRVGDFN-----ESNYYMEGNTGHPVFATRYGKIAV 592
           L N+++ I    G +I ++ K H+  V   N     ESN  + G    P   T  GK+  
Sbjct: 94  LLNSSLFIEPLHGEIISRYSKAHLFDVEIKNGPTLKESNTTLRGEAILPPCKTPLGKVGS 153

Query: 591 NICFGRHHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYMWNVEARNAAI-TNCYFTAAIN 415
            ICF        +     GA I+  PSA     G +   W V  R  A+ + CY  A   
Sbjct: 154 AICFDIRFPEQAIKLRNMGAHIITYPSAFTEKTGAAH--WEVLLRARALDSQCYVIA--- 208

Query: 414 RVGYEEFPNEFTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLS--RTRDGLLIAAVDLN 241
                       +  GK  H +    YG S    P G      S   + +GL+ A +DLN
Sbjct: 209 -----------PAQGGK--HNEKRASYGHSMIVDPWGTVIAQYSDISSPNGLIFADLDLN 255

Query: 240 LNRQIR 223
           L   +R
Sbjct: 256 LVDHVR 261


>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 565 DVVPSEADVHRDLAVSGREYRMAGVTFHVVV 657
           DVVP  A   R L    + Y  AG TFH V+
Sbjct: 25  DVVPKTAANFRALCTGEKGYGYAGSTFHRVI 55


>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 440 FVIAAFLASTFHMYSLPPSPAIVAD 514
           F+ AA  + + H+ S+PPSP +++D
Sbjct: 156 FIDAANSSDSCHLVSIPPSPQLLSD 180


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 557  QFKTWCRPKQMFTAILPYLVANTGWPVLPS 646
            +F T    K +FTA+ P+L A T + ++PS
Sbjct: 1521 RFPTRVLCKPVFTAVPPFLFAGTDFALIPS 1550


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,101,047
Number of Sequences: 5004
Number of extensions: 62880
Number of successful extensions: 186
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)