Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_D24
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25903| Best HMM Match : No HMM Matches (HMM E-Value=.)              74   1e-13
SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)          39   0.004
SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)                 39   0.005
SB_25537| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_33872| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_8338| Best HMM Match : PA (HMM E-Value=5.7e-10)                     29   3.3  
SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_10985| Best HMM Match : E-MAP-115 (HMM E-Value=5.5)                 29   5.8  
SB_9671| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_25903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 33/59 (55%), Positives = 45/59 (76%)
 Frame = -3

Query: 300 RCPGLSRTRDGLLIAAVDLNLNRQIRDRRCYYMTQRLDMYVNSLSKVLELDYKPQVVHE 124
           R  GLSRTRDGLL+  VDLNL RQ++D+  + MT RL+MY  SLS+ ++ +Y+P +VHE
Sbjct: 38  RYHGLSRTRDGLLVTEVDLNLCRQVKDKWGFQMTSRLEMYAKSLSEAVQRNYEPPIVHE 96


>SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)
          Length = 128

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
 Frame = -3

Query: 771 RSXSDILWNTAVVISDTGNVIGKHRKNH-----IPRVGDFNESNYYMEGNTGHPVFATRY 607
           R+ +  L+NT++    +GN++GKHRK H     +P    F ES     G     +  T Y
Sbjct: 46  RASNGKLYNTSLSYDPSGNLMGKHRKIHLFDIDVPGKIRFQESEVLSPGE-NLTILDTEY 104

Query: 606 GKIAVNICF 580
            KI + IC+
Sbjct: 105 CKIGIGICY 113


>SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)
          Length = 242

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
 Frame = -3

Query: 771 RSXSDILWNTAVVISDTGNVIGKHRKNH-----IPRVGDFNESNYYMEGNTGHPVFATRY 607
           R+ +  L+NT++    +GN++GKHRK H     +P    F ES     G     +  T Y
Sbjct: 90  RASNRKLYNTSLSYDPSGNLMGKHRKIHLFDIDVPGKIRFQESEVLSPGE-NLTILDTEY 148

Query: 606 GKIAVNICF 580
            KI + IC+
Sbjct: 149 CKIGIGICY 157


>SB_25537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 494

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
 Frame = -3

Query: 318 CGPDG----VRCPGLSRTRDGL--LIAAVDLNLNRQIRDRRCYYMTQRLDMYVNSLSKVL 157
           C PDG    VRC  + ++R  +  L A +  + N  +R RRC  +  +L+   NS+S++L
Sbjct: 183 CRPDGYIPLVRCSVVLQSRSCIQTLRATLQNDWNAILRKRRCNVVESKLNHGANSISRLL 242


>SB_33872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 716

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
 Frame = -3

Query: 747 NTAVVISDTGNVIGK---HRKNHIPRVGDFNE----SNYYMEGN-TGHPVFATRYGKI 598
           NTA +IS+TG+VI K   H K + P   D +       Y   GN TG PV+A  YG++
Sbjct: 52  NTAKIISNTGDVIYKTRTHEKVYEPSEKDPSAIPPFLAYSPSGNVTGDPVYA-NYGRV 108


>SB_8338| Best HMM Match : PA (HMM E-Value=5.7e-10)
          Length = 326

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
 Frame = -3

Query: 747 NTAVVISDTGNVIGK---HRKNHIPRVGDFNE----SNYYMEGN-TGHPVFATRYGKI 598
           NTA +IS+TG+VI K   H K + P   D +       Y   GN TG PV+A  YG++
Sbjct: 143 NTAKIISNTGDVIYKTRTHEKVYEPSEKDPSAIPPFLAYSPSGNVTGDPVYA-NYGRV 199


>SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -3

Query: 771 RSXSDILWNTAVVISDTGNVIGKHRK 694
           R+ +  L+NT++    +GN++GKHRK
Sbjct: 92  RASNGKLYNTSLSYDPSGNLMGKHRK 117


>SB_10985| Best HMM Match : E-MAP-115 (HMM E-Value=5.5)
          Length = 320

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 523 NDLSSILSEHHPVQDVVPSEADVHRDL 603
           +D+   LS+H P +DVV  EADV + L
Sbjct: 266 DDVREELSQHVPQEDVVIKEADVKKQL 292


>SB_9671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 162 LC*DCSRTC-PGVGSCNNNVCL*SVC 236
           +C DCS TC PGV  C   +C+  VC
Sbjct: 123 ICSDCSMTCPPGVERC-EQMCVSGVC 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,926,468
Number of Sequences: 59808
Number of extensions: 521110
Number of successful extensions: 1458
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1458
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)