Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_D22
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   118   1e-27
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   117   2e-27
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    31   0.19 
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    28   1.8  
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    28   1.8  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   4.1  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    25   9.5  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  118 bits (284), Expect = 1e-27
 Identities = 60/118 (50%), Positives = 79/118 (66%), Gaps = 2/118 (1%)
 Frame = -3

Query: 710 GLXRAFRNIPGVEXXXXXXXXXXXLAPGGHXGRFVIWTQSAFGRLDPLFGSWKTPSKQKK 531
           G+ +AFRNIPGVE           LAPGGH GRFVIWT+SAFG LD +FGS    ++ KK
Sbjct: 216 GIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKK 275

Query: 530 NFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPY 363
           N+ LP+  ++N D+TRL+ SDEI+ +++A    RV RA  +K NPL N   + +LNPY
Sbjct: 276 NYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNPY 333



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 778 GXMGXRRXIQRKGPLIIFXQ 719
           G +  RR +QR+GPL++F +
Sbjct: 194 GKLRNRRHVQRRGPLVVFNE 213


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  117 bits (282), Expect = 2e-27
 Identities = 60/118 (50%), Positives = 79/118 (66%), Gaps = 2/118 (1%)
 Frame = -3

Query: 710 GLXRAFRNIPGVEXXXXXXXXXXXLAPGGHXGRFVIWTQSAFGRLDPLFGSWKTPSKQKK 531
           G+ +AFRNIPGVE           LAPGGH GRFVIWT+SAFG LD +FGS    ++ KK
Sbjct: 216 GIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKK 275

Query: 530 NFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPY 363
           N+ LP+  ++N D+TRL+ SDEI+ +++A    RV RA  +K NPL N   + +LNPY
Sbjct: 276 NYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPY 333



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 778 GXMGXRRXIQRKGPLIIFXQ 719
           G +  RR +QR+GPL++F +
Sbjct: 194 GKLRNRRHVQRRGPLVVFNE 213


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 29/92 (31%), Positives = 47/92 (51%)
 Frame = +3

Query: 246 LSLHSGVSLXQSTLLGISQSLQVLPSAQL*XSFPLQHGRVRIEFQHRLVIGERVQFACST 425
           L  HSG S   S +  I+ S     S++     P    +V +EF+ RL IG+RV+     
Sbjct: 170 LKHHSG-SKSASAISNIAPSHSNSTSSRRPYIHPAFLSQVAVEFRKRLNIGDRVKDGLLY 228

Query: 426 DHAFVGSTEDLPDLIRLEKTCEVSVGHLWLGQ 521
             AF+GS E +  L+ + +T + ++  L LG+
Sbjct: 229 KDAFLGS-EAVDVLMHIVRTTDRNLA-LLLGR 258


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -3

Query: 542 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNP 366
           KQK + +  Q K     LT+   S E + VL       +R T+K   LTN+  ++K +P
Sbjct: 730 KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSP 786


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -1

Query: 619 LDVSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQRWPTLTSH 485
           +D+ S+ LS H+   T +S   R H      ST PSQ + +  SH
Sbjct: 299 VDLQSNELSHHNVRTTLFSDDSRFHSKIHTHSTPPSQMY-SAASH 342


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 613 VSSSGLSPHSAGLTPYSGHGRHHRNK 536
           VS S    HS    P+S  GRH+R K
Sbjct: 120 VSRSSSIGHSGSTAPWSSVGRHNRKK 145


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
 Frame = +1

Query: 265 FRLXSPLFSASARAFKFFLLRSSXI--AFLFSTAA*G--LSFSIALLL--VSGFNLRVAR 426
           + L +P F    + F+  ++  S +   F+ S    G  L+ S+ L L  V GF++ + +
Sbjct: 296 YSLLTPFFDIHLQ-FQLIVMHMSIVQVGFINSVKTFGSLLTCSVCLFLTYVGGFSVHMMK 354

Query: 427 ITRLLGARRTFLI 465
            T L+G   T LI
Sbjct: 355 TTMLIGLTATTLI 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,250,565
Number of Sequences: 5004
Number of extensions: 38269
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)