Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_D22
         (799 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   108   4e-24
Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p...    31   1.3  
Z98261-1|CAB10931.1|  920|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z71266-11|CAA95847.1|  920|Caenorhabditis elegans Hypothetical p...    28   6.7  
Z71258-16|CAA95786.1|  920|Caenorhabditis elegans Hypothetical p...    28   6.7  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  108 bits (260), Expect = 4e-24
 Identities = 52/114 (45%), Positives = 72/114 (63%), Gaps = 1/114 (0%)
 Frame = -3

Query: 701 RAFRNIPGVEXXXXXXXXXXXLAPGGHXGRFVIWTQSAFGRLDPLFGSWKTPSKQ-KKNF 525
           RAFRNIPGV+           LAPGGH GR +IWT+SAF +LD ++G+    S Q KK +
Sbjct: 218 RAFRNIPGVDVMNVERLNLLKLAPGGHLGRLIIWTESAFKKLDTIYGTTVANSSQLKKGW 277

Query: 524 NLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 363
           ++P P MAN+D +R+++S+E+ K +RAP K  +      NPL     + KLNPY
Sbjct: 278 SVPLPIMANSDFSRIIRSEEVVKAIRAPKKNPVLPKVHRNPLKKRTLLYKLNPY 331


>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
           protein F44D12.1 protein.
          Length = 1034

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
 Frame = -1

Query: 631 REVXLDVSSSGLSPHSAGLTPYSG---HGRHHRNKRRTSTCPSQRWPTLTSHVFSSLMRS 461
           R    + ++S   P+S   TP S     G+ HR     S      +PT+     SS+M S
Sbjct: 527 RSFSSNTTTSDARPYSMHFTPTSSTIMEGKPHRRSAVYSPSHPPVYPTIRDDSMSSVMSS 586

Query: 460 GRSSVLPTNA*SVLHAN*TRSPIT 389
             S  LP+ + S  + N +   +T
Sbjct: 587 SNSIRLPSTSFSNQYPNNSTCSLT 610


>Z98261-1|CAB10931.1|  920|Caenorhabditis elegans Hypothetical
           protein C01H6.9 protein.
          Length = 920

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 683 GCCGRRXSNPEXLXKNYEGPLTLDTT 760
           G CG   +N E     YEGP+ + TT
Sbjct: 893 GSCGESLTNEEFFSDFYEGPIGMSTT 918


>Z71266-11|CAA95847.1|  920|Caenorhabditis elegans Hypothetical
           protein C01H6.9 protein.
          Length = 920

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 683 GCCGRRXSNPEXLXKNYEGPLTLDTT 760
           G CG   +N E     YEGP+ + TT
Sbjct: 893 GSCGESLTNEEFFSDFYEGPIGMSTT 918


>Z71258-16|CAA95786.1|  920|Caenorhabditis elegans Hypothetical
           protein C01H6.9 protein.
          Length = 920

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 683 GCCGRRXSNPEXLXKNYEGPLTLDTT 760
           G CG   +N E     YEGP+ + TT
Sbjct: 893 GSCGESLTNEEFFSDFYEGPIGMSTT 918


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = -3

Query: 617  GRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 438
            G F+  T    G     F   +TP   +  +N   P+ A      +++  +IR +L  P 
Sbjct: 2789 GEFLKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPL 2848

Query: 437  KRVI 426
            K  +
Sbjct: 2849 KEFV 2852


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = -3

Query: 617  GRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 438
            G F+  T    G     F   +TP   +  +N   P+ A      +++  +IR +L  P 
Sbjct: 2789 GEFLKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPL 2848

Query: 437  KRVI 426
            K  +
Sbjct: 2849 KEFV 2852


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,572,809
Number of Sequences: 27780
Number of extensions: 232658
Number of successful extensions: 548
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)