Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_D21
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    29   0.63 
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    28   1.5  
SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc...    27   3.4  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    27   4.5  
SPCC14G10.03c |ump1||proteasome maturation factor Ump1 |Schizosa...    26   5.9  

>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 330 PPNADLSKPPDPERWLPKYERT 265
           P + +    PDP+RW+PK +RT
Sbjct: 524 PKSFNPKATPDPQRWIPKRDRT 545


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -3

Query: 263 RTESDEALDVTSSRVAKECPPLPRINMT*VNSRPRLXPATSAKSPRV 123
           RT S     ++S       PP+P +  T  N  P   P+  +KSP V
Sbjct: 355 RTPSGSLTPLSSRPAHTSLPPIPTVQTTSSNVPPVNRPSLKSKSPSV 401


>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 206 DIPWLPLMTSRLMPRRFLYAVRSYFGNHLSGSGG 307
           D+PW P   SR+  +    A RS FG +++   G
Sbjct: 140 DLPWTPTQLSRIARQGSGSACRSLFGGYVAWEMG 173


>SPAC23C4.19 |spt5||transcription elongation factor
            Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -2

Query: 213  GMSTTATDQYDMSKQQTTPXPGDLCQESPG 124
            G S T  D  D SK  T P PG     +PG
Sbjct: 944  GFSETNWDTEDNSKPYTAPTPGAWAAPTPG 973


>SPCC14G10.03c |ump1||proteasome maturation factor Ump1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 129

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 163 HAXPRRPLPRVPGSKSSRPRALGSASN 83
           H   RR + +   S+SSRP ALG ++N
Sbjct: 64  HEPVRREMEQKLASQSSRPLALGGSAN 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,352,784
Number of Sequences: 5004
Number of extensions: 38603
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)