Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_D21
         (853 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55186| Best HMM Match : TPR_2 (HMM E-Value=0.91)                    54   1e-07
SB_43682| Best HMM Match : CcoS (HMM E-Value=4.1)                      33   0.29 
SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_5832| Best HMM Match : Sof1 (HMM E-Value=3)                         28   8.4  

>SB_55186| Best HMM Match : TPR_2 (HMM E-Value=0.91)
          Length = 571

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 24/62 (38%), Positives = 37/62 (59%)
 Frame = -2

Query: 333 LPPNADLSKPPDPERWLPKYERTAYRKRRGIRRDVIKGSQGMSTTATDQYDMSKQQTTPX 154
           LP N +    PDPERWLPK ER+ Y+ +R  + +V KG+QG ++ ++   +  K   +P 
Sbjct: 466 LPKNCNTEVDPDPERWLPKRERSYYKGKRQKKTNVGKGTQGTASASSTGTESPKTPASPK 525

Query: 153 PG 148
            G
Sbjct: 526 AG 527


>SB_43682| Best HMM Match : CcoS (HMM E-Value=4.1)
          Length = 187

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 22/68 (32%), Positives = 33/68 (48%)
 Frame = -3

Query: 413 ASRNNLPELPALSWDRRRKRNASATANSRRTQTSPNLPIRKGGCQSTSELRTESDEALDV 234
           A  ++L  +P    D+RR+R +S+TA S    + P+L I+    QS  E R  +D     
Sbjct: 83  AIASSLSSIPPSRHDKRRRRYSSSTAASSVPNSRPSLDIQAFTIQSLPEGRVVADRVQYD 142

Query: 233 TSSRVAKE 210
             S V  E
Sbjct: 143 DHSDVGSE 150


>SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1535

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/52 (28%), Positives = 30/52 (57%)
 Frame = -3

Query: 368 RRRKRNASATANSRRTQTSPNLPIRKGGCQSTSELRTESDEALDVTSSRVAK 213
           R+RK+N   T N++ T++S + P      +S+ +   +  ++L  T +R+AK
Sbjct: 726 RKRKKNIKKTNNNKNTRSSSSSPCHAAPLRSSLKPCFKEPKSLIRTETRLAK 777


>SB_5832| Best HMM Match : Sof1 (HMM E-Value=3)
          Length = 232

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
 Frame = -3

Query: 389 LPALSWDRRRKRNASATANSRRTQTSPNLPIRKGGCQSTSELRTESDEALDVTSSRVA-K 213
           LP LS  RRR  +A A   +   Q  P+   R    Q   E+R +      ++ +R + +
Sbjct: 61  LPQLSEARRRATSAPARVATSAEQDEPSFVTRSATLQHRFEIRQKEGVKSPMSRTRNSPR 120

Query: 212 ECPPLPRINMT*VNSRPRLXPATSAKSPRVEVKQT 108
           E P +     T  ++   L    + K P ++ + T
Sbjct: 121 ETPRISTPCQTCSSTPGNLAVKKALKVPTIDFEHT 155


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,348,738
Number of Sequences: 59808
Number of extensions: 337950
Number of successful extensions: 1138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)