Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_D19
(783 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d... 194 9e-51
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 159 5e-40
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3... 32 0.11
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.3
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 2.3
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 26 5.3
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 26 5.3
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 7.0
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 26 7.0
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 9.3
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 25 9.3
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 25 9.3
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 9.3
>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 194 bits (474), Expect = 9e-51
Identities = 94/202 (46%), Positives = 118/202 (58%)
Frame = -3
Query: 769 GXGVPTGKGPAXILPXVNQDXIXXXXXXXXXXXXXXLGCKAAGXNRIIGVDINPDKFEVA 590
G G+ TG G A I + + G RI G+D+NP+K A
Sbjct: 178 GCGITTGYGAATITADIKEGDSVAVFGLGSVGLAVIQGAVKKRAGRIFGIDVNPEKKNWA 237
Query: 589 KKFGVNEFVNPKDYDKPIQQVLVDLTDGGLEYTFECIGNVGTMRAALEACHKXXXXXXXX 410
FG +F+NP D PIQ VL+ TDGGL++TF+C GNV MR+ALEACHK
Sbjct: 238 MSFGATDFINPNDLQSPIQDVLIHETDGGLDWTFDCTGNVHVMRSALEACHKGWGQSIVI 297
Query: 409 XXXXXGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPL 230
G+EISTRPFQLVTGR W+G AFGG K R +P LV EYL+ KL +D+++TH PL
Sbjct: 298 GVAAAGQEISTRPFQLVTGRVWRGCAFGGVKGRSQLPDLVKEYLDHKLEIDKYITHRRPL 357
Query: 229 KEINEAFHLMHAGKSIRAVVDM 164
KEINEAF MH G I+ V+ +
Sbjct: 358 KEINEAFTDMHNGNCIKTVLSI 379
>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 159 bits (385), Expect = 5e-40
Identities = 83/202 (41%), Positives = 109/202 (53%)
Frame = -3
Query: 769 GXGVPTGKGPAXILPXVNQDXIXXXXXXXXXXXXXXLGCKAAGXNRIIGVDINPDKFEVA 590
G GV TG G V G AAG +RII +DIN DK A
Sbjct: 175 GCGVTTGFGAVTHSAKVESGSTVAVVGCGCVGLAAMQGAVAAGASRIIAIDINADKEVYA 234
Query: 589 KKFGVNEFVNPKDYDKPIQQVLVDLTDGGLEYTFECIGNVGTMRAALEACHKXXXXXXXX 410
KKFG +F++ K + Q ++D+TDGG++Y F+C GNV M+ L+ CHK
Sbjct: 235 KKFGATDFIDSSKV-KDLVQYVIDVTDGGVDYAFDCTGNVTVMQQELQFCHKGWGKLCVI 293
Query: 409 XXXXXGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPL 230
G+ + RPF +VTGR G+AFGG K R +P VDEY++ +DE++T+ PL
Sbjct: 294 GVAAAGKTLDFRPFLVVTGRQVLGSAFGGVKGRSELPNFVDEYMQGHFKVDEYITNEEPL 353
Query: 229 KEINEAFHLMHAGKSIRAVVDM 164
K IN+AF MH GK IR VVDM
Sbjct: 354 KNINKAFDHMHEGKCIRCVVDM 375
>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 260
Score = 31.9 bits (69), Expect = 0.11
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -3
Query: 634 RIIGVDINPDKFEVAKKFGVNEFVNP 557
R++G+D +PD + A++ G+N +V P
Sbjct: 57 RVVGIDASPDMIKAARELGLNAYVIP 82
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +3
Query: 333 AVPFQVRPVTSWNGRVLISSPTAATPMITDTPHPLWQASSAALMVPTFPIHSKVYSRPPS 512
+VP+ PVTS N + S+P +TP+ T + V + P+ + + S
Sbjct: 501 SVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTS 560
Query: 513 VKSTNT 530
V T+T
Sbjct: 561 VPYTST 566
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 333 AVPFQVRPVTSWNGRVLISSPTAATPMIT 419
+VP+ PVTS N + S+P +TP+ T
Sbjct: 560 SVPYTSTPVTSSNYTISSSTPVTSTPVTT 588
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.5 bits (58), Expect = 2.3
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
Frame = +3
Query: 396 TAATPMITDTPHPLWQASSAALMVPTFPIHSKVY--SRPPSVKSTNTC*IXXXXXXXXXX 569
++ T ++ T ++ S+ VPT I S + S P S+ S++T
Sbjct: 240 SSLTNTVSPTESTFYETKSSTSSVPTQTIDSSSFTSSTPVSLTSSSTS-SSGSSQDSTTI 298
Query: 570 XXXPNFLATSNLSGLMSTPIMRLXPAALHPRATA*XNSTXTK 695
P+ +ATS L S+PI P+ T +S T+
Sbjct: 299 DSTPSTIATSTLQPTTSSPITTSAPSLSSALPTTYPSSLSTE 340
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 26.2 bits (55), Expect = 5.3
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +3
Query: 351 RPVTSWNGRVLISSPTAATPMITDTPHPLWQASSAALMVPTFPIHSKVYSRPPSVKS 521
R T WN + +SP+ + D+P+ L + A T P ++ RP S+ S
Sbjct: 177 RRFTEWNVPLRETSPSPSET--ADSPNKLPKQKHPAYSFVTLPKREEILKRPASLHS 231
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +2
Query: 518 IHQYLLNWFIIILRVDKFIDSKFLSYLKLVRVDVNTNNAIGTCRFASKSNS 670
+H L +W +I+ + DS LSY+++ R + + F + S S
Sbjct: 185 LHSSLSSWMMILESSKEIKDSTLLSYMQISRYTLKACRRLVVFGFQNPSES 235
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 378 VLISSPT-AATPMITDTPHPLWQASSAALMVPTFPIHSKVYSRPPSVKSTN 527
VL++S A T + H A +A +++P+F + SK+ + S+K N
Sbjct: 1000 VLVNSEADTALRAKTTSQHLKQSAMAAKVVLPSFIVTSKISKQTKSIKELN 1050
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Frame = -2
Query: 407 CSCCW---RRDQHSSIPTCYRSHLEGNSFWR 324
C CW + D + P C R + E N WR
Sbjct: 42 CRFCWHHIKEDLNGRCPACRRLYTEENVQWR 72
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 9.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 538 IQQVLVDLTDGGLEYTFECIGNVGTMRAALEACH 437
I Q + DLT G + +C+ + A+L CH
Sbjct: 3280 IVQFITDLTVGEFQLCLKCLLSFSQHAASLRICH 3313
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 25.4 bits (53), Expect = 9.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 145 IYTIFVHLLNLFSSAFTTSIIKIHN 71
IYT+F HLLN++ S K N
Sbjct: 1720 IYTLFEHLLNIYKETINDSDKKEKN 1744
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 229 KEINEAFHLMHAGKSIRAVVDM*FLRKNIY 140
K +N F L H K+ + DM ++RKN Y
Sbjct: 444 KLLNLTFELQHLRKTSKNDEDMSYVRKNSY 473
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 271 SSPSTHLQALVH-FLYFCNLQKLFPSRCD 354
SSPS+ L+ F Y CN+ KL+ + D
Sbjct: 914 SSPSSDLEVKQQAFTYVCNISKLYVYKSD 942
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,892,919
Number of Sequences: 5004
Number of extensions: 59476
Number of successful extensions: 182
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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