Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_D14
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.65 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.1  
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    27   2.6  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    27   3.5  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   6.1  

>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 31/97 (31%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
 Frame = +1

Query: 280 PPRSNYSFAGAPFP-------PRTKVASPPVIGSERLRLQVPGWRPGEQARRLEGDGAVS 438
           PP SNY+ A  P+        P++  A PP   S R R+  P + PG    +    G   
Sbjct: 98  PPSSNYNTAKPPYQTSQFYARPQSSYAPPP---SGRPRISYP-YPPGYMCYKCHNTGYKD 153

Query: 439 SDRPDRDRALRTSXCRDVL-----AGQXVAPYGEPRI 534
           S RP    A R     DV       G  V   G+PRI
Sbjct: 154 SGRPCGRCARRFGRSYDVQFSRPPPGALVVYPGDPRI 190


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 265 PPRLEPPRSNYSFAGAPFPPRTKVASPP 348
           PP   PPRSN +    P PP+ + A PP
Sbjct: 337 PPPPPPPRSNAA-GSIPLPPQGRSAPPP 363


>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = -2

Query: 449 GRSEDTAPSPSRRRACSPGRHPGTWR-RRRSLPITGGEATFVLGGKGAPAKE*FERGGSN 273
           G+  D  P PS  R C    H G+ +   +   +TGG++     G G  A   F R GS+
Sbjct: 14  GKHADLDPEPSLLRYCDGRVHVGSGKLAEKKTLLTGGDS-----GIGKAAAVMFAREGSD 68

Query: 272 LGGPC 258
           L   C
Sbjct: 69  LVISC 73


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +1

Query: 274  LEPPRSNYSFAGAPFPPRTKVASPP 348
            L PPRS  S +G P P  T V  PP
Sbjct: 1020 LLPPRSGSSSSGVPAPNLTPVNVPP 1044


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = +1

Query: 226 RVRQAARPRLQHGP--PRLEPPRSNYSFAGAPFPPRTKVASPPVIGS 360
           R RQ  R R    P  PR+  P   Y+     +PP T  A P   GS
Sbjct: 244 RARQTTRTRSNTLPWSPRVFGPTLGYNTPPFGYPPTTSSALPNASGS 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,534,542
Number of Sequences: 5004
Number of extensions: 43947
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)