Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_D14
(870 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.70
SB_54473| Best HMM Match : DLIC (HMM E-Value=0) 31 1.2
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23) 31 1.6
SB_47581| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_5034| Best HMM Match : Extensin_2 (HMM E-Value=0.0055) 30 2.8
SB_9576| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0016) 29 6.5
SB_50855| Best HMM Match : Ras (HMM E-Value=0) 29 6.5
SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069) 29 6.5
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 29 6.5
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_984| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086) 28 8.6
SB_16879| Best HMM Match : Stig1 (HMM E-Value=1) 28 8.6
SB_1963| Best HMM Match : rve (HMM E-Value=0.022) 28 8.6
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 31.9 bits (69), Expect = 0.70
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +1
Query: 262 GPPR-LEPPRSNYSFAGAPFPPRTKVASPPVIGSERLRLQVPGWRPGEQARRLEGDGAVS 438
GPPR + PP + G PF PR PP G R + P + R + D S
Sbjct: 404 GPPRPMGPPGPH----GPPFGPR---GPPPHGGPPRGPMGPGPGMPPMRPGRFDHDSEHS 456
Query: 439 SDRPDRDRALRT 474
DR DRDR R+
Sbjct: 457 RDRADRDRLARS 468
>SB_54473| Best HMM Match : DLIC (HMM E-Value=0)
Length = 1401
Score = 31.1 bits (67), Expect = 1.2
Identities = 26/101 (25%), Positives = 35/101 (34%), Gaps = 2/101 (1%)
Frame = +1
Query: 142 PEGEASAVAAHPVRENRADRLDGTEAGRRVRQAARPRLQHGPPRLEPP--RSNYSFAGAP 315
P E S V+ A+ L GT+ G PR++ G P R G
Sbjct: 596 PRVEGSRVSYRCPGWRGAECLTGTQGGGEQSVLPVPRVESGRVSYRYPGWRGAECLTGTQ 655
Query: 316 FPPRTKVASPPVIGSERLRLQVPGWRPGEQARRLEGDGAVS 438
V P + R+ + PGWR E +G G S
Sbjct: 656 GGEEQSVLQVPRVEGSRVSYRCPGWRGAECLTGTQGGGEQS 696
Score = 29.1 bits (62), Expect = 4.9
Identities = 22/84 (26%), Positives = 29/84 (34%), Gaps = 2/84 (2%)
Frame = +1
Query: 193 ADRLDGTEAGRRVRQAARPRLQHGPPRLEPP--RSNYSFAGAPFPPRTKVASPPVIGSER 366
A+ L GT+ GR PR+ P R G V P + R
Sbjct: 113 AECLTGTQGGREQSVLPVPRVDRSRVSYRCPGWRGAECLTGTQGGGEQSVLPVPRVDRSR 172
Query: 367 LRLQVPGWRPGEQARRLEGDGAVS 438
+ + PGWR E +G G S
Sbjct: 173 VSYRYPGWRGAECLTGTQGGGEQS 196
>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1414
Score = 31.1 bits (67), Expect = 1.2
Identities = 28/79 (35%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Frame = -2
Query: 581 GWPXRLYMGGGAVDGTIRG---SPYGATX*PARTSRXCDVRSARSRSGRSEDTAPSPSRR 411
G P R MGG G RG +PY P R S SR + D P P R
Sbjct: 746 GAPGRDNMGGRGRGGRGRGGYNAPYDNRGKPGDVRRRSPP-SGPSRGFQDRDRGP-PGRG 803
Query: 410 RACSPGRHPGTWRRRRSLP 354
R PGR G R R P
Sbjct: 804 RDAPPGRGQGYTNRGRGQP 822
>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
Length = 4240
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +1
Query: 97 KVPAKTTMAGQHLRQPEGEASAVAAHPVRENRADRLDGTEAGRRVRQA-ARPRLQHGPPR 273
K P K T+AG+ + P+ + + A +++++ + + R + ++PR QH P
Sbjct: 851 KEPPKPTLAGEKM-SPQPQLTMTAPKSKQQSQSIATEQLNSQRTSQPTLSQPRSQHPPKA 909
Query: 274 LEPPRSNYSFAGAPFPPRTKV 336
+ P ++ +S P + +V
Sbjct: 910 MAPEQTLFSQPSTPLDHKEEV 930
>SB_47581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 188
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = +1
Query: 310 APFPPRTKVASPPVIGSERLRLQVPGWRPGEQARRLEGDGAVSSDRPDRDRALRTSXCRD 489
A FPP + PP E R++ R ++ D V D P+R R +
Sbjct: 16 ASFPP----SPPPPSPKESYRIEHVKTRKSKKMGTSCSDYVVRVDLPERQRLQEALDDVE 71
Query: 490 VLAGQXVAPYGEPRIVP 540
+ G+ V YG PR+ P
Sbjct: 72 GVLGRDVGGYGGPRLRP 88
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 29.9 bits (64), Expect = 2.8
Identities = 23/72 (31%), Positives = 29/72 (40%)
Frame = +1
Query: 205 DGTEAGRRVRQAARPRLQHGPPRLEPPRSNYSFAGAPFPPRTKVASPPVIGSERLRLQVP 384
DG RR R A+P L P + P S PP+ KV PV+ S P
Sbjct: 38 DGGNTNRRTRIQAKPALNLPSPPSKTPSS--------VPPQAKVDETPVLPSPPTNTPRP 89
Query: 385 GWRPGEQARRLE 420
P + RRL+
Sbjct: 90 SRIPRLKRRRLQ 101
>SB_5034| Best HMM Match : Extensin_2 (HMM E-Value=0.0055)
Length = 695
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 232 RQAARP--RLQHGPPRLEPPRSNYSFAGAPFPPRTKVASPPVIGSERLRLQVP 384
+QAAR R +G P L P R G P PP+ + PP+ G+ LR P
Sbjct: 446 QQAARINYRASYGAPPLPPKRGG----GPPLPPK-RGGGPPLFGAMALRTGAP 493
>SB_9576| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0016)
Length = 491
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = -1
Query: 237 LADPSAGLRTVEAVRPVLADWVGRDRGCLTFRLTQMLTGHGCFGRYLFKIAGREPTAQCH 58
+ P R R V W D C ++++ M+ GC G Y++K+ T
Sbjct: 359 MTQPHPDARDGVVQRTVCFHW---DGDCCHYQVSIMV--RGCLGYYVYKLPSVNFTINAR 413
Query: 57 HCAD 46
+CAD
Sbjct: 414 YCAD 417
>SB_50855| Best HMM Match : Ras (HMM E-Value=0)
Length = 733
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +1
Query: 187 NRADRLDGTEAGRRVRQAARPRLQHGPPRLEPP 285
+R+DR D A RR RPRLQ PR +PP
Sbjct: 545 DRSDRYDDHGADRRDAPKERPRLQL-QPRTKPP 576
>SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069)
Length = 932
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 158 PRSRPTQSARTGRTASTVRRPADGSAKRRDHASSTDRRDWSLRA 289
PRS Q++R + ST+ R D A R ++ST R +A
Sbjct: 589 PRSTDAQASRAATSNSTIPRSTDAQASRAATSNSTIPRSTDAQA 632
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 28.7 bits (61), Expect = 6.5
Identities = 22/72 (30%), Positives = 29/72 (40%)
Frame = +1
Query: 205 DGTEAGRRVRQAARPRLQHGPPRLEPPRSNYSFAGAPFPPRTKVASPPVIGSERLRLQVP 384
DG RR R A+P L P + P S PP+ KV P++ S P
Sbjct: 78 DGGNTNRRTRIPAKPALNLPSPPSKTPSS--------VPPQAKVDETPLLPSPPTSTPRP 129
Query: 385 GWRPGEQARRLE 420
P + RRL+
Sbjct: 130 SHIPRLKRRRLQ 141
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 28.3 bits (60), Expect = 8.6
Identities = 21/77 (27%), Positives = 31/77 (40%)
Frame = +1
Query: 85 GYFEKVPAKTTMAGQHLRQPEGEASAVAAHPVRENRADRLDGTEAGRRVRQAARPRLQHG 264
G+F + + G P G + + PVR R+ L E R R +R R +
Sbjct: 96 GHFARDCTRRRYGGGRSPSPRGRRRSRSRSPVRRRRSPSL---ERRSRSRSGSRER-RRS 151
Query: 265 PPRLEPPRSNYSFAGAP 315
P R R SF+ +P
Sbjct: 152 PSRSPERRRERSFSNSP 168
>SB_984| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 265 PPRLEPPRSNYSFAGAPFPPRTKVASPPV 351
PP +PP NYS GA PR A PP+
Sbjct: 182 PPYCQPPPGNYSGYGA-MDPRQGGAQPPM 209
>SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)
Length = 627
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 229 VRQAARPRLQHGPPRLEPPRSNYSFAGAPFPPRTKVASPPV 351
V A P + PPR PP++ P PP +V+ PP+
Sbjct: 144 VHGLAHPSITQPPPRHSPPQTPVP-PPPPLPPFAQVSLPPL 183
>SB_16879| Best HMM Match : Stig1 (HMM E-Value=1)
Length = 232
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 265 PPRLEPPRSNYSFAGAPFPPRTKVASPPV 351
PP +PP NYS GA PR A PP+
Sbjct: 182 PPYCQPPPGNYSGYGA-MDPRQGGAQPPM 209
>SB_1963| Best HMM Match : rve (HMM E-Value=0.022)
Length = 931
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Frame = +2
Query: 140 SRKVRHPRSRPTQSARTGRTASTVRR------PADGSAKRR 244
SRKV+ PR R T +A G + +VRR P G KRR
Sbjct: 144 SRKVKAPRKRSTGNAGRGGASQSVRRSRVDPEPPAGFRKRR 184
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,549,599
Number of Sequences: 59808
Number of extensions: 437201
Number of successful extensions: 1743
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1730
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2491217872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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