Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_D13
         (776 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR456522-1|CAG30408.1|  931|Homo sapiens MKL1 protein.                 31   3.5  
BC115039-1|AAI15040.1|  798|Homo sapiens MKL1 protein protein.         31   3.5  
U91543-1|AAC39923.1| 2000|Homo sapiens zinc-finger helicase prot...    30   8.1  
BC110648-1|AAI10649.1|  661|Homo sapiens CHD3 protein protein.         30   8.1  
AF006515-1|AAB87383.1| 1944|Homo sapiens CHD3 protein.                 30   8.1  

>CR456522-1|CAG30408.1|  931|Homo sapiens MKL1 protein.
          Length = 931

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = -1

Query: 662 NPRFHTPTTPDLTSISINPLTPX*KEFAPGLKP-PLSSEAPSAYLTPSSLGMXKGVSPP 489
           NP    P T  +   ++ P  P        L+P P    AP   L P   G+ KGV+PP
Sbjct: 598 NPSLAAPATNHIDPCAVAPGPPSVVVKQEALQPEPEPVPAPQLLLGPQGPGLIKGVAPP 656


>BC115039-1|AAI15040.1|  798|Homo sapiens MKL1 protein protein.
          Length = 798

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = -1

Query: 662 NPRFHTPTTPDLTSISINPLTPX*KEFAPGLKP-PLSSEAPSAYLTPSSLGMXKGVSPP 489
           NP    P T  +   ++ P  P        L+P P    AP   L P   G+ KGV+PP
Sbjct: 598 NPSLAAPATNHIDPCAVAPGPPSVVVKQEALQPEPEPVPAPQLLLGPQGPGLIKGVAPP 656


>U91543-1|AAC39923.1| 2000|Homo sapiens zinc-finger helicase protein.
          Length = 2000

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = -1

Query: 677  STRSSNPRFHTPTTPDLTS----ISINPLTPX*KEFAPGLKPPLSSE 549
            S+R+S+P   +PTTP+ ++     +  P TP   E   G++ PL  E
Sbjct: 1528 SSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKE 1574


>BC110648-1|AAI10649.1|  661|Homo sapiens CHD3 protein protein.
          Length = 661

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = -1

Query: 677 STRSSNPRFHTPTTPDLTS----ISINPLTPX*KEFAPGLKPPLSSE 549
           S+R+S+P   +PTTP+ ++     +  P TP   E   G++ PL  E
Sbjct: 189 SSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKE 235


>AF006515-1|AAB87383.1| 1944|Homo sapiens CHD3 protein.
          Length = 1944

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = -1

Query: 677  STRSSNPRFHTPTTPDLTS----ISINPLTPX*KEFAPGLKPPLSSE 549
            S+R+S+P   +PTTP+ ++     +  P TP   E   G++ PL  E
Sbjct: 1528 SSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKE 1574


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,099,851
Number of Sequences: 237096
Number of extensions: 2070699
Number of successful extensions: 5314
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5312
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)