Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_D09
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      50   3e-07
SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...    27   2.4  
SPCC613.11c |meu23|B13958-2|DUF1773 family protein 2|Schizosacch...    26   5.6  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 3/210 (1%)
 Frame = -3

Query: 786 ERDEKHSDIXWXTAVVISXTGNVIGKHRKNHISESRRF*RIQXTXMEGNTXPILYSRPDT 607
           E++EK S+I + + + I+  GN+ G +RK H+ ++ R         +G+  PI       
Sbjct: 90  EKEEKQSNIIYNSCIYITENGNLGGVYRKVHLFDTER-----KHFKKGSDFPIF--ETSF 142

Query: 606 ARFAVNICFGRHHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYM--WNVEARNAAITNCY 433
            +  V IC+         +   NGA+++      +A    + Y   W++  +  A  NC 
Sbjct: 143 GKLGVMICWDTAFPEVARIHALNGADLL-----VVATNWENPYSDDWDLVTKARAFENCI 197

Query: 432 FTAAINRVGYEEFPNEFTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLIAA 253
              A NRVG +E  +                F+G S   GP G     L   ++G++   
Sbjct: 198 PLVAANRVGTDEKLS----------------FFGHSKIIGPTGKVIKALDEEKEGVISYT 241

Query: 252 VDLNLNRQIRDRRCYYMTQRL-DMYVNSLS 166
           VDL+  + +R     +   R+ D+Y   LS
Sbjct: 242 VDLDDAKPLRKNYYTFFEDRMPDLYKRLLS 271


>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 440 FVIAAFLASTFHMYSLPPSPAIVAD 514
           F+ AA  + + H+ S+PPSP +++D
Sbjct: 156 FIDAANSSDSCHLVSIPPSPQLLSD 180


>SPCC613.11c |meu23|B13958-2|DUF1773 family protein
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +1

Query: 541 LSEHHPVQDVVP--SEADVHRESCRIWSRIQDGXGVTFHXSXLDSLKSPTLGNVVLA 705
           ++ ++P  D+ P  S  DV R S    SR   G GVTFH +    +K      V L+
Sbjct: 184 INGNNPDPDLPPITSVQDVDRLSRSQCSRYLQGYGVTFHVNETIGMKKKLASAVGLS 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,978,635
Number of Sequences: 5004
Number of extensions: 57216
Number of successful extensions: 163
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)