Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_D09
         (818 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683...   245   4e-65
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711...    38   0.007
02_05_0489 - 29452520-29453104                                         30   1.9  
02_01_0487 + 3503003-3503037,3505802-3505833,3506012-3506127,350...    30   1.9  
04_03_1018 + 21753634-21753640,21754282-21754315,21754413-217544...    28   7.8  

>07_03_0405 -
           17767303-17767665,17767815-17768039,17768115-17768342,
           17768607-17768621,17768622-17768810,17769106-17769213,
           17769917-17770045
          Length = 418

 Score =  245 bits (599), Expect = 4e-65
 Identities = 125/219 (57%), Positives = 147/219 (67%)
 Frame = -3

Query: 786 ERDEKHSDIXWXTAVVISXTGNVIGKHRKNHISESRRF*RIQXTXMEGNTXPILYSRPDT 607
           ERD  H +I W TAVVI   GN+IG HRKNHI     F       MEGNT   ++     
Sbjct: 195 ERDVNHGEIVWNTAVVIGNHGNIIGIHRKNHIPRVGDF-NESTYYMEGNTGHPVFETA-Y 252

Query: 606 ARFAVNICFGRHHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYMWNVEARNAAITNCYFT 427
            +  VNIC+GRHH LNW+ FG NGAEIVFNPSAT+ GE  SE MW +EARNAAI N YF 
Sbjct: 253 GKIGVNICYGRHHPLNWLAFGLNGAEIVFNPSATV-GEL-SEPMWPIEARNAAIANSYFV 310

Query: 426 AAINRVGYEEFPNEFTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLIAAVD 247
            +INRVG E FPN FTS DGKP H D G FYGSS+F  PD    P LSR RDGL+I+ +D
Sbjct: 311 GSINRVGTEVFPNPFTSGDGKPQHADFGHFYGSSHFSAPDASCTPSLSRYRDGLMISDMD 370

Query: 246 LNLNRQIRDRRCYYMTQRLDMYVNSLSKVLELDYKPQVV 130
           LNL RQI+D+  + MT R D Y + LS+ L+ D+KPQV+
Sbjct: 371 LNLCRQIKDKWGFRMTARYDTYASLLSEYLKPDFKPQVI 409


>02_04_0096 +
           19669428-19669525,19670770-19670818,19671041-19671132,
           19671235-19671386,19671478-19671524,19671617-19671650,
           19671769-19671935,19672070-19672166,19672239-19672408
          Length = 301

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 48/205 (23%), Positives = 84/205 (40%), Gaps = 6/205 (2%)
 Frame = -3

Query: 777 EKHSDIXWXTAVVISXTGNVIGKHRKNHISESRRF*RIQXTXMEGNTXPILYSRPDTARF 598
           E+ ++  + +  +I   G  +G +RK+HI +   + + +     G+T    + +   A  
Sbjct: 98  EEANNAHYNSVAIIDADGTDLGLYRKSHIPDGPGY-QEKFYFNPGDTGFKAF-KTKYATI 155

Query: 597 AVNICFGRHHVLNWMMFGQNGAEIVFNPSATIAGEG-----GSEYMWNVEARNAAITNCY 433
            V IC+ +            GAEI+F P+A I  E       S   W    +  A  N  
Sbjct: 156 GVGICWDQWFPECARAMVLQGAEILFYPTA-IGSEPQDNNLDSREHWKRVMQGHAGANLV 214

Query: 432 FTAAINRVGYEEFPNEFTSADGKPAHKDLGL-FYGSSYFCGPDGVRCPGLSRTRDGLLIA 256
              A NR+G E    E         H +  + F+G+S+  GP G      +   + +L+A
Sbjct: 215 PLVASNRIGRETVETE---------HGESTITFFGNSFIAGPTGEIVKLANDKDEDVLVA 265

Query: 255 AVDLNLNRQIRDRRCYYMTQRLDMY 181
             DL+  +  R     +  +R D+Y
Sbjct: 266 EFDLDEIKSTRHGWGIFRDRRPDLY 290


>02_05_0489 - 29452520-29453104
          Length = 194

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +2

Query: 458 LASTFHMYSLPP--SPAIVADGLKTISAPFCPNIIQFKTWCRPKQMFTANLAVSGREYRM 631
           L S+F ++ L P  +PA  +     ++AP   NI   +   RP+    A L+++GR  R 
Sbjct: 98  LPSSFLLHLLEPYRAPASPSSSSSPVAAPLQKNISCIQPSVRPELFAIAALSLTGRHRRR 157

Query: 632 GXVLPS 649
              LP+
Sbjct: 158 HHQLPT 163


>02_01_0487 +
           3503003-3503037,3505802-3505833,3506012-3506127,
           3506227-3506437,3506555-3506792,3507075-3507252,
           3507962-3508079,3508167-3508373,3509134-3509234
          Length = 411

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 21/64 (32%), Positives = 32/64 (50%)
 Frame = -3

Query: 522 FNPSATIAGEGGSEYMWNVEARNAAITNCYFTAAINRVGYEEFPNEFTSADGKPAHKDLG 343
           F+PS  I GEGG   ++  + RN  +      +  +R G +EF NE   A    +H++L 
Sbjct: 45  FSPSNKI-GEGGFGSVYKGKLRNGKLVAVKVLSLESRQGAKEFLNEL-MAISNVSHENLV 102

Query: 342 LFYG 331
             YG
Sbjct: 103 KLYG 106


>04_03_1018 +
           21753634-21753640,21754282-21754315,21754413-21754432,
           21754485-21755782
          Length = 452

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +1

Query: 265 QAVSGAGQTGAPNAVGAAEVARSVEQAQVFVCRFPVSRSELVRELLVADSVDGRCEVAV 441
           +  SG      P+A+ A E   + E  ++ V R P     LVR + + +S +   E AV
Sbjct: 342 KCASGGCAGAVPSALAAVEALAASEAGRMAVARAPGGTRALVRHVFMMNSSNDGSEHAV 400


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,412,704
Number of Sequences: 37544
Number of extensions: 419577
Number of successful extensions: 1212
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)