Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_D08
         (805 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315...    33   0.35 
07_03_1140 - 24258627-24258849,24259967-24260089,24260200-242609...    31   0.81 
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    31   1.4  
07_03_0846 - 21983581-21986055                                         29   3.3  
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581     29   3.3  
11_06_0591 - 25300751-25300918,25301325-25301874,25301954-25302042     28   7.6  
03_05_0183 - 21681673-21682524                                         28   7.6  
01_06_0695 - 31292622-31293317                                         28   7.6  
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960...    28   10.0 

>02_04_0232 +
           21130122-21130454,21130895-21131053,21131424-21131582,
           21132420-21132512,21133321-21133437,21133623-21133697,
           21133878-21134104,21134200-21135073
          Length = 678

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +1

Query: 70  PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 198
           PS TP  ER  S+D   PR     Y   R+RD    K+  S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407


>07_03_1140 -
           24258627-24258849,24259967-24260089,24260200-24260921,
           24260945-24261073,24261484-24261714
          Length = 475

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 639 CHKPVIPGGTFLAPLAKTL 695
           C KP+IP GT +APL K +
Sbjct: 307 CRKPIIPSGTMVAPLVKKI 325


>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -3

Query: 338 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 204
           A+ A +GK +   E  E   S+QCD T  + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +1

Query: 196 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 345
           DL+D  G  +R    +C+T    S     PD   S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373


>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
          Length = 311

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 425 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 327
           G LV  L R   GG    SAG+C   S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236


>11_06_0591 - 25300751-25300918,25301325-25301874,25301954-25302042
          Length = 268

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 20/66 (30%), Positives = 27/66 (40%)
 Frame = -3

Query: 467 AIVILLSXERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRE 288
           A+++  + E       L H L  AAGGA+    G  +N S    S+   G   L V    
Sbjct: 120 AVLVATNLESCFHLSQLAHPLLLAAGGARGGGGGCVVNISSVAGSV---GMPALAVYSMT 176

Query: 287 SGGSKQ 270
            GG  Q
Sbjct: 177 KGGMNQ 182


>03_05_0183 - 21681673-21682524
          Length = 283

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 639 SQAFIATLLFDPSMSALPIIAKQK 568
           SQAF A LL D + +A+P++  QK
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQK 252


>01_06_0695 - 31292622-31293317
          Length = 231

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +1

Query: 22  PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 156
           P     L   Q D   PS++      SST  S P HR  L P  R
Sbjct: 3   PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47


>03_05_0951 +
           29093962-29094373,29095291-29095388,29095689-29096087,
           29096999-29097724,29097802-29097968,29098046-29098311,
           29098396-29098581,29099072-29099346,29099435-29099683
          Length = 925

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -3

Query: 347 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 174
           K+ AS A  G D     P R  GG K+    S  + SKR  + R + F     +L    L
Sbjct: 4   KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63

Query: 173 TRASR 159
           TRA+R
Sbjct: 64  TRAAR 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,094,853
Number of Sequences: 37544
Number of extensions: 470818
Number of successful extensions: 1419
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1419
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)