Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_D08
         (805 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.82 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   2.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   5.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.8  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   7.7  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   7.7  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   7.7  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   7.7  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   7.7  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   7.7  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   7.7  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   7.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   7.7  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 37  SLNRSQHDAALPSTTPRQERKSST 108
           ++N+ Q   +   TTP++ERK++T
Sbjct: 776 NVNKEQSPNSTKETTPKKERKTAT 799


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 627 IATLLFDPSMSALPIIAKQKFAKRWIVHP 541
           +A  LF    + +    +QK A  W++HP
Sbjct: 55  LAMKLFGSKKALMKERIRQKAAGHWVIHP 83


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 627 IATLLFDPSMSALPIIAKQKFAKRWIVHP 541
           +A  LF    + +    +QK A  W++HP
Sbjct: 55  LAMKLFGSKKALMKERIRQKAAGHWVIHP 83


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 627 IATLLFDPSMSALPIIAKQKFAKRWIVHP 541
           +A  LF    + +    +QK A  W++HP
Sbjct: 55  LAMKLFGSKKALMKERIRQKAAGHWVIHP 83


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 410 ALGRAAGGAKLPSAGLCLNASKAEASL 330
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 410 ALGRAAGGAKLPSAGLCLNASKAEASL 330
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 410 ALGRAAGGAKLPSAGLCLNASKAEASL 330
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 410 ALGRAAGGAKLPSAGLCLNASKAEASL 330
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = +1

Query: 565 EFLLRNDRKSRHRRIKKQ 618
           E++++ +R+  H R+KK+
Sbjct: 41  EWMIQQEREREHERLKKK 58


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = +1

Query: 565 EFLLRNDRKSRHRRIKKQ 618
           E++++ +R+  H R+KK+
Sbjct: 41  EWMIQQEREREHERLKKK 58


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = +1

Query: 565 EFLLRNDRKSRHRRIKKQ 618
           E++++ +R+  H R+KK+
Sbjct: 41  EWMIQQEREREHERLKKK 58


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = +1

Query: 565 EFLLRNDRKSRHRRIKKQ 618
           E++++ +R+  H R+KK+
Sbjct: 41  EWMIQQEREREHERLKKK 58


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = +1

Query: 565 EFLLRNDRKSRHRRIKKQ 618
           E++++ +R+  H R+KK+
Sbjct: 41  EWMIQQEREREHERLKKK 58


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = +1

Query: 565 EFLLRNDRKSRHRRIKKQ 618
           E++++ +R+  H R+KK+
Sbjct: 41  EWMIQQEREREHERLKKK 58


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = +1

Query: 565 EFLLRNDRKSRHRRIKKQ 618
           E++++ +R+  H R+KK+
Sbjct: 41  EWMIQQEREREHERLKKK 58


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = +1

Query: 565 EFLLRNDRKSRHRRIKKQ 618
           E++++ +R+  H R+KK+
Sbjct: 41  EWMIQQEREREHERLKKK 58


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 56  TTPLYRAQHPARNGSRLQTIPSP 124
           T+PL + Q  A  G+    +PSP
Sbjct: 237 TSPLSQQQQAAPQGAASANLPSP 259


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,507
Number of Sequences: 438
Number of extensions: 4340
Number of successful extensions: 31
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)