Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_D06
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   124   1e-29
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   124   2e-29
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    29   0.75 
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   4.0  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   5.3  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   9.3  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  124 bits (300), Expect = 1e-29
 Identities = 68/140 (48%), Positives = 89/140 (63%), Gaps = 2/140 (1%)
 Frame = -2

Query: 512 GLTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSEQKK 333
           G+ +AFRNIPGVE           LAPGGHLGRFVIWT+SAFG LD +FGS    ++ KK
Sbjct: 216 GIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKK 275

Query: 332 NFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPYAA 159
           N+ LP+  ++N D+TRL+ SDEI+ +++A    RV RA  +K NPL N   + +LNPYA 
Sbjct: 276 NYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNPYAK 335

Query: 158 VLKRKAILELRRRKNLKXPG 99
               KA ++L   K  K  G
Sbjct: 336 AY--KANVKLNTGKTPKAAG 353


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  124 bits (298), Expect = 2e-29
 Identities = 67/140 (47%), Positives = 89/140 (63%), Gaps = 2/140 (1%)
 Frame = -2

Query: 512 GLTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSEQKK 333
           G+ +AFRNIPGVE           LAPGGHLGRFVIWT+SAFG LD +FGS    ++ KK
Sbjct: 216 GIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKK 275

Query: 332 NFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPYAA 159
           N+ LP+  ++N D+TRL+ SDEI+ +++A    RV RA  +K NPL N   + +LNPYA 
Sbjct: 276 NYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPYAK 335

Query: 158 VLKRKAILELRRRKNLKXPG 99
               KA +++   K  K  G
Sbjct: 336 AY--KANVKINSEKTPKAAG 353


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 25/79 (31%), Positives = 34/79 (43%)
 Frame = -3

Query: 421 LDVSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQRWPTLTSHVFSSLMRSGRSSVLP 242
           +D+ S+ LS H+   T +S   R H      ST PSQ + +  SH       S R     
Sbjct: 299 VDLQSNELSHHNVRTTLFSDDSRFHSKIHTHSTPPSQMY-SAASHFRYRSDPSTRHVSNS 357

Query: 241 TNA*SVLHAN*TRSPITRP 185
           TN  S LH + T   +  P
Sbjct: 358 TNK-SSLHPSPTSLRVAHP 375


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 415 VSSSGLSPHSAGLTPYSGHGRHHRNK 338
           VS S    HS    P+S  GRH+R K
Sbjct: 120 VSRSSSIGHSGSTAPWSSVGRHNRKK 145


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = -2

Query: 344 EQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNP 168
           +QK + +  Q K     LT+   S E + VL       +R T+K   LTN+  ++K +P
Sbjct: 730 KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSP 786


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 18/54 (33%), Positives = 32/54 (59%)
 Frame = +3

Query: 162 RVRIEFQHGLVIGERVQFACSTDHAFVGSTEDLPDLIRLEKTCEVSVGHLWLGQ 323
           +V +EF+  L IG+RV+       AF+GS E +  L+ + +T + ++  L LG+
Sbjct: 207 QVAVEFRKRLNIGDRVKDGLLYKDAFLGS-EAVDVLMHIVRTTDRNLA-LLLGR 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,532,410
Number of Sequences: 5004
Number of extensions: 46798
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)