Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_D06
(783 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 134 7e-32
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 131 7e-31
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 31 1.4
01_06_0912 + 32933362-32933515,32933628-32933697,32933893-329340... 30 2.4
01_01_0612 + 4565422-4565481,4565597-4565671,4565760-4566332,456... 29 3.2
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 29 4.2
02_04_0073 - 19471254-19472681 29 4.2
08_02_0934 + 22747742-22748644 28 9.6
03_03_0125 - 14630078-14630136,14630197-14631160 28 9.6
03_03_0122 - 14617879-14618871 28 9.6
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 134 bits (324), Expect = 7e-32
Identities = 62/125 (49%), Positives = 87/125 (69%)
Frame = -2
Query: 509 LTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSEQKKN 330
+ +AFRN+PGV+ LAPGGHLGRFVIWT+SAF +L+ ++G+++ PS +KK
Sbjct: 222 IVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKG 281
Query: 329 FNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLK 150
F LP+PKMAN DL R++ SDE++ V++ NK V R ++ NPL N A+LKLNPY +
Sbjct: 282 FILPRPKMANADLGRIINSDEVQSVVKPLNKEVKRREKRKNPLKNVAAVLKLNPYFGTAR 341
Query: 149 RKAIL 135
+ A L
Sbjct: 342 KMATL 346
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 131 bits (316), Expect = 7e-31
Identities = 62/125 (49%), Positives = 84/125 (67%)
Frame = -2
Query: 509 LTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSEQKKN 330
+ +AFRN+PGV+ LAPGGHLGRFVIWT+ AF +LD ++G + TP+ +KK
Sbjct: 221 VVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKG 280
Query: 329 FNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLK 150
F LP+PKMAN DL+RL+ SDE++ V++ NK V + NPL N A+LKLNPY +
Sbjct: 281 FVLPRPKMANADLSRLINSDEVQSVVKPINKEVKLREARRNPLKNVAAVLKLNPYFGTAR 340
Query: 149 RKAIL 135
+ A L
Sbjct: 341 KMAAL 345
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -3
Query: 442 SWLREVILDVSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQ--RWPTLTSHVFSSLM 269
S+LR + LD+SSS +P S+ H HH+ + S WP S ++
Sbjct: 379 SFLRCLGLDMSSSSSAPPSSSGQQQQHHHHHHQETMQVPLPASSLPEWPPRLQPEPSPML 438
Query: 268 RSGRSSVLPTNA 233
SG LP +A
Sbjct: 439 SSGLGLGLPYDA 450
>01_06_0912 +
32933362-32933515,32933628-32933697,32933893-32934035,
32934127-32934637,32934693-32934729,32935254-32935350,
32936774-32937153
Length = 463
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 186 HAETQSLRGRAEEESYLRAAQKEELEGPWL 97
HA Q L+G EE+ L Q+E + PWL
Sbjct: 320 HAVVQGLQGEDEEQHQLPGGQQELVARPWL 349
>01_01_0612 +
4565422-4565481,4565597-4565671,4565760-4566332,
4566438-4566551,4566676-4567377
Length = 507
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 372 GVKPAECGLSPDDETSKMTSRSQLQ*VQLVNIQELHTGDVA-EGASQTLNP 521
G+ A G++ DD+ K SR L + ++N+ +GD A GA + P
Sbjct: 147 GLSCARGGVASDDDDDKQASRRALPPMPVLNLSSDSSGDAAGAGAGEPTQP 197
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -2
Query: 437 APG--GHLGRFVIWTQSAFGRLDPLFGSWKTPSEQKKNFNLPQPKMANT 297
APG G GR+V+ SA LDP F SW S + K F++ + A++
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717
>02_04_0073 - 19471254-19472681
Length = 475
Score = 29.1 bits (62), Expect = 4.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 397 SPHSAGLTPYSGHGRHHRNKR 335
+P G +P S HG HHR+++
Sbjct: 20 APRPRGASPLSSHGHHHRSRK 40
>08_02_0934 + 22747742-22748644
Length = 300
Score = 27.9 bits (59), Expect = 9.6
Identities = 22/72 (30%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Frame = -3
Query: 394 PHSAGLTPYSGHGRHHRNKRRTSTCPSQRWPTLTSHVFSSLMRSGRSSV-LPTNA*SVLH 218
P++A Y GH HHR T+ P S S SG S+ P N V
Sbjct: 152 PYAAAFAAYPGHHHHHR-FAATAAAAMPPPPHYPSWAAGSRYYSGPGSISQPINGSPVAP 210
Query: 217 AN*TRSPITRPC 182
A R P C
Sbjct: 211 AGMWRLPAAASC 222
>03_03_0125 - 14630078-14630136,14630197-14631160
Length = 340
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -2
Query: 419 GRFVIWTQSAFGRL-DPLFGSWK 354
G FV+W AFG L L G+WK
Sbjct: 127 GGFVVWADRAFGPLAGSLLGTWK 149
>03_03_0122 - 14617879-14618871
Length = 330
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -2
Query: 419 GRFVIWTQSAFGRL-DPLFGSWK 354
G FV+W AFG L L G+WK
Sbjct: 124 GGFVVWADRAFGPLAGSLLGTWK 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,842,625
Number of Sequences: 37544
Number of extensions: 359889
Number of successful extensions: 904
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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