Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_D06
(783 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 117 8e-27
Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p... 30 1.6
Z99267-1|CAB16465.1| 732|Caenorhabditis elegans C33A12.12 protein. 28 6.6
Z68493-14|CAA92801.1| 732|Caenorhabditis elegans Hypothetical p... 28 6.6
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 28 6.6
L15201-5|AAA27943.2| 219|Caenorhabditis elegans Egg laying defe... 28 6.6
AL033537-1|CAA22147.1| 732|Caenorhabditis elegans Hypothetical ... 28 6.6
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 117 bits (282), Expect = 8e-27
Identities = 55/128 (42%), Positives = 83/128 (64%), Gaps = 1/128 (0%)
Frame = -2
Query: 503 RAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSEQ-KKNF 327
RAFRNIPGV+ LAPGGHLGR +IWT+SAF +LD ++G+ S Q KK +
Sbjct: 218 RAFRNIPGVDVMNVERLNLLKLAPGGHLGRLIIWTESAFKKLDTIYGTTVANSSQLKKGW 277
Query: 326 NLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKR 147
++P P MAN+D +R+++S+E+ K +RAP K + NPL + KLNPYA++L++
Sbjct: 278 SVPLPIMANSDFSRIIRSEEVVKAIRAPKKNPVLPKVHRNPLKKRTLLYKLNPYASILRK 337
Query: 146 KAILELRR 123
+ +++
Sbjct: 338 ASKANVKK 345
Score = 37.9 bits (84), Expect = 0.008
Identities = 22/80 (27%), Positives = 32/80 (40%)
Frame = -3
Query: 760 PXXXXGXGXNFXKIPEFPXVXPXXXQEXNKXKQAXIFLRPLKAWSDILKVYKSQXXXXXX 581
P G ++ E P V + K K+A +FLR W+DI KVY S+
Sbjct: 133 PALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGK 192
Query: 580 XXXXXXXXXXXXGPLIIFKQ 521
GP++I+ Q
Sbjct: 193 GKLRNRQHKQKLGPVVIYGQ 212
>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
protein F44D12.1 protein.
Length = 1034
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = -3
Query: 418 DVSSSGLSPHSAGLTPYSG---HGRHHRNKRRTSTCPSQRWPTLTSHVFSSLMRSGRSSV 248
+ ++S P+S TP S G+ HR S +PT+ SS+M S S
Sbjct: 532 NTTTSDARPYSMHFTPTSSTIMEGKPHRRSAVYSPSHPPVYPTIRDDSMSSVMSSSNSIR 591
Query: 247 LPTNA*SVLHAN*TRSPIT 191
LP+ + S + N + +T
Sbjct: 592 LPSTSFSNQYPNNSTCSLT 610
>Z99267-1|CAB16465.1| 732|Caenorhabditis elegans C33A12.12 protein.
Length = 732
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = -2
Query: 299 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 144
T++ LLK DEIR++ N R I+ + LN +++M ++ +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600
>Z68493-14|CAA92801.1| 732|Caenorhabditis elegans Hypothetical
protein C33A12.12 protein.
Length = 732
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = -2
Query: 299 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 144
T++ LLK DEIR++ N R I+ + LN +++M ++ +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
F54B3.1b protein.
Length = 3394
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/64 (23%), Positives = 26/64 (40%)
Frame = -2
Query: 419 GRFVIWTQSAFGRLDPLFGSWKTPSEQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 240
G F+ T G F +TP + +N P+ A +++ +IR +L P
Sbjct: 2789 GEFLKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPL 2848
Query: 239 KRVI 228
K +
Sbjct: 2849 KEFV 2852
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
F54B3.1a protein.
Length = 3396
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/64 (23%), Positives = 26/64 (40%)
Frame = -2
Query: 419 GRFVIWTQSAFGRLDPLFGSWKTPSEQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 240
G F+ T G F +TP + +N P+ A +++ +IR +L P
Sbjct: 2789 GEFLKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPL 2848
Query: 239 KRVI 228
K +
Sbjct: 2849 KEFV 2852
>L15201-5|AAA27943.2| 219|Caenorhabditis elegans Egg laying
defective protein 5,isoform a protein.
Length = 219
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -1
Query: 255 PPCSQQTRDPCYTQIEPAHQ*QGHAETQSLRGRAEEESYLRAAQKEEL 112
P C T P Y + Q +T L + ++ SY+ Q+EEL
Sbjct: 94 PQCYPNTAWPNYASSKKGRQTYQRYQTSVLEAKFQQSSYVSKKQREEL 141
>AL033537-1|CAA22147.1| 732|Caenorhabditis elegans Hypothetical
protein C33A12.12 protein.
Length = 732
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = -2
Query: 299 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 144
T++ LLK DEIR++ N R I+ + LN +++M ++ +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,231,335
Number of Sequences: 27780
Number of extensions: 280439
Number of successful extensions: 736
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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