Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_D04
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   156   3e-39
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   156   3e-39
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    29   0.77 
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    29   0.77 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.3  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.1  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   7.1  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   9.4  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  156 bits (379), Expect = 3e-39
 Identities = 78/133 (58%), Positives = 90/133 (67%)
 Frame = -3

Query: 673 VDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTV 494
           + S F Q+EMID I           T+RW TK+LPRKTH+GLRKVACIGAWHP+ V +TV
Sbjct: 205 IKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTV 264

Query: 493 ARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEV 314
           ARAG  GY HRT++N KIYRIG G    D K    NAST++D +EK ITPMGGF  YG V
Sbjct: 265 ARAGNAGYMHRTQLNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVV 317

Query: 313 NNDFVMXQGLLHG 275
            NDFVM  G   G
Sbjct: 318 ENDFVMLNGATPG 330



 Score = 91.9 bits (218), Expect = 1e-19
 Identities = 41/61 (67%), Positives = 49/61 (80%)
 Frame = -1

Query: 288 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 109
           G   GP KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385

Query: 108 D 106
           D
Sbjct: 386 D 386



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 726 TIEDKVKWAREHLE 685
           ++ DKV+WAREH E
Sbjct: 187 SVADKVEWAREHFE 200


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  156 bits (379), Expect = 3e-39
 Identities = 78/133 (58%), Positives = 90/133 (67%)
 Frame = -3

Query: 673 VDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTV 494
           + S F Q+EMID I           T+RW TK+LPRKTH+GLRKVACIGAWHP+ V +TV
Sbjct: 205 IKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTV 264

Query: 493 ARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEV 314
           ARAG  GY HRT++N KIYRIG G    D K    NAST++D +EK ITPMGGF  YG V
Sbjct: 265 ARAGNAGYMHRTQLNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVV 317

Query: 313 NNDFVMXQGLLHG 275
            NDFVM  G   G
Sbjct: 318 ENDFVMLNGATPG 330



 Score = 91.9 bits (218), Expect = 1e-19
 Identities = 41/61 (67%), Positives = 49/61 (80%)
 Frame = -1

Query: 288 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 109
           G   GP KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385

Query: 108 D 106
           D
Sbjct: 386 D 386



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 726 TIEDKVKWAREHLE 685
           ++ DKV+WAREH E
Sbjct: 187 SVADKVEWAREHFE 200


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 398 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 496
           NFA+L+  SL ++ +F++H +T    +   T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -1

Query: 729 CT--IEDKVKWAREHLENLXLSILCLP 655
           CT  IE  + WA+E+++    S+LCLP
Sbjct: 332 CTDAIEQTITWAKEYIKKAKDSLLCLP 358


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 365 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 487
           ++ L RC++   F +LF  S S +  FL   S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 127 HGYTQEGSYSRRSCGYHNPS 68
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 350 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 478
           N FL  +  SRC V  N+ I + V S    ++F++     M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 410 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 535
           LF+D LS   D L+H   ++ +    T  S  H      SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,245,065
Number of Sequences: 5004
Number of extensions: 66366
Number of successful extensions: 168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)