Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_D04
         (795 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               189   3e-48
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         108   6e-24
SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)               97   1e-20
SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)                   29   3.3  
SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.7  
SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)                   28   7.6  

>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  189 bits (460), Expect = 3e-48
 Identities = 88/114 (77%), Positives = 95/114 (83%)
 Frame = -3

Query: 682 PXPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVS 503
           P PV  VF+ DEMID I           T RW TKKLPRKTHKGLRKVACIGAWHP+RVS
Sbjct: 204 PAPVRKVFSPDEMIDVIGVTKGHGFKGVTYRWGTKKLPRKTHKGLRKVACIGAWHPARVS 263

Query: 502 FTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPM 341
           F+VARAGQ GYHHRTE+NKKIYRIGQGIHKKDGKVIKNNASTEYDL++KSI+PM
Sbjct: 264 FSVARAGQAGYHHRTELNKKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSISPM 317


>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  108 bits (259), Expect = 6e-24
 Identities = 50/66 (75%), Positives = 55/66 (83%)
 Frame = -1

Query: 291 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 112
           KGC +GPKKR++TLRKSL VHT R A EKI LKFIDTSSKFGHGRFQ PA+K AFMG LK
Sbjct: 231 KGCVVGPKKRVLTLRKSLLVHTSRDAAEKITLKFIDTSSKFGHGRFQHPAEKRAFMGMLK 290

Query: 111 KDRIRE 94
            DR +E
Sbjct: 291 SDREKE 296



 Score = 38.3 bits (85), Expect = 0.007
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = -3

Query: 340 GGFPHYGEVNNDFVMXQGLLHG 275
           GGFPHYG+VN DF+M +G + G
Sbjct: 215 GGFPHYGQVNEDFLMVKGCVVG 236


>SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 42/45 (93%), Positives = 45/45 (100%)
 Frame = -3

Query: 475 GYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPM 341
           GYHHRTE+NKKIYRIGQGIHKKDGKVIKNNASTEYDL++KSITPM
Sbjct: 2   GYHHRTELNKKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSITPM 46


>SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)
          Length = 458

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 25  NVYFHGLHLRLRSSRWGCGSRSFFANTILLE 117
           N+Y HG+ L LR   +GCGS       +L++
Sbjct: 368 NIYSHGVRLFLRYLGYGCGSDGALPYCVLMD 398


>SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +2

Query: 323 IMGETSHRCNGFLRQIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLT 484
           ++GE       FLR++ +S C++  N+   F   +    D L+ F++  + F T
Sbjct: 274 VLGENFQDLARFLRELQISPCLMVLNYPSFFSADIQKLNDALMFFTSRPLLFET 327


>SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 270 KKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMG 121
           K R++  +K  ++H+  +   K  ++F+   SKF H    T A   A  G
Sbjct: 317 KDRLLEWKKERQIHSFSSTTLKARIRFVAAMSKFAHTTEDTTAWDEATKG 366


>SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)
          Length = 545

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -3

Query: 157 IPDAG*QGCIHGYTQEGSYSRRSCGYHNPSGCCAALSVVREN 32
           I D G   CIH +T +G Y    C + +  G        REN
Sbjct: 410 ISDDG-ANCIHVFTLDGQYVSNECSWESHEGYTHIAVTAREN 450


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,968,712
Number of Sequences: 59808
Number of extensions: 533432
Number of successful extensions: 1153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)