Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_D03
         (819 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   2.9  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    22   5.1  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   5.1  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 321 LIFHTIAFSEALYFA 365
           +IFH I F+  LYFA
Sbjct: 46  IIFHLILFAVLLYFA 60


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 45  LRFTKPFDPASLSTWSRRVRSV 110
           L   KPF PAS  + SR ++ V
Sbjct: 252 LTHRKPFHPASTQSLSRWIKMV 273


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 349 RLYTSLSPSSKSVAPRWCSAELESS 423
           R +  LSP   S APR  S E +SS
Sbjct: 109 RPHPYLSPLFHSAAPRTASRETKSS 133


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,470
Number of Sequences: 336
Number of extensions: 3875
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22414104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)