Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_D03
(819 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 112 7e-26
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 73 4e-14
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 32 0.11
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 29 0.60
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S... 27 3.2
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce... 27 3.2
SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|c... 27 4.2
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 26 5.6
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos... 25 9.8
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc... 25 9.8
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 112 bits (269), Expect = 7e-26
Identities = 53/138 (38%), Positives = 83/138 (60%), Gaps = 1/138 (0%)
Frame = -3
Query: 589 PPDGEFELMRYRTTKDISLPFRVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPT 410
PPDGE ELM YR+ ++I++PFR++P+V ++ + K+ ++ +++++ P L + +IP
Sbjct: 280 PPDGEVELMSYRSHENINIPFRIVPIVEQLSKQKIIYRISIRADY-PHKLSSSLNFRIPV 338
Query: 409 PLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPI 230
P N +GKA Y+ SEN I WKI R G E AE+EL T ++ W +PPI
Sbjct: 339 PTNVVKANPRVNRGKAGYEPSENIINWKIPRFLGETELIFYAEVELSNTTNQQIWAKPPI 398
Query: 229 SMGFEV-PFAPSGFKVRY 179
S+ F + F SG V+Y
Sbjct: 399 SLDFNILMFTSSGLHVQY 416
Score = 52.4 bits (120), Expect = 7e-08
Identities = 20/40 (50%), Positives = 28/40 (70%)
Frame = -2
Query: 707 NTDSDPARSGKPVVVIDDCQFHQCVKLSKFETEHSISFIP 588
N +P+ V+++DCQFHQCV+L +FE EH I+FIP
Sbjct: 241 NNSRNPSSVNGGFVILEDCQFHQCVRLPEFENEHRITFIP 280
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -1
Query: 177 LKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 85
L+V EP + S + IKWVRY R+G E R
Sbjct: 417 LRVSEP--SNSKYKSIKWVRYSTRAGTCEIR 445
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 73.3 bits (172), Expect = 4e-14
Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 4/141 (2%)
Frame = -3
Query: 589 PPDGEFELMRYRTTKDISLPFRVIPLVREV-GRTKMEVKVVLKSNFKPSLLGQKIEVKIP 413
PPDGEF+LM YR + ++ P + V +++E V K+ FK + +++ IP
Sbjct: 257 PPDGEFDLMSYRMSSNVR-PLIWVECESIVHSGSRIEFMVKAKAQFKKRCIANNVQIIIP 315
Query: 412 TPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIEL--LETDTKKKWTR 239
P + + G +Y + A+VW IK+ AG KE + AE+ L ++ + + +
Sbjct: 316 VPEDADSPRFQTSNGHVQYAPEQAAMVWNIKKFAGGKEFFMRAEMGLPSVKNEDIQVQKK 375
Query: 238 PPISMGFEVP-FAPSGFKVRY 179
P+ + F +P F SG +VRY
Sbjct: 376 RPVQLKFAIPYFTTSGIQVRY 396
Score = 40.7 bits (91), Expect = 2e-04
Identities = 15/27 (55%), Positives = 23/27 (85%)
Frame = -2
Query: 668 VVIDDCQFHQCVKLSKFETEHSISFIP 588
V ++D +FHQCV+L++FE + +ISFIP
Sbjct: 231 VEMEDVKFHQCVRLARFENDRTISFIP 257
Score = 29.9 bits (64), Expect = 0.45
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -1
Query: 177 LKVFEPKLNYSDHDVIKWVRYIGRSG 100
LK+ EPKLNY + WVRY+ ++G
Sbjct: 397 LKITEPKLNY---HAMPWVRYVTQNG 419
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 31.9 bits (69), Expect = 0.11
Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Frame = -3
Query: 589 PPDGEFELMRYRTTKDISLPFRVIPLVREVGRTKME--VKVVLKSNFKPSLLGQKIEVKI 416
PPDG+F L ++T D + + +P+V E + K++ +V +++ K S+ KI + I
Sbjct: 252 PPDGKFTLASFQT--DFATQ-KSLPVVVE-AKNKLDGRFEVRIRNTGKKSVENLKILITI 307
Query: 415 PTPLNTSGV-QLICLKGKAKYKASENAIV-WKIKRMA 311
P L + V + + +KY E I+ W +K++A
Sbjct: 308 PQALKSVTVTEGNYIFRASKYTHMEEGILEWSVKKLA 344
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 29.5 bits (63), Expect = 0.60
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -3
Query: 607 IPSPSYPPDGEFELMRYRTTKDISLPFRVIPLVREVGRTKMEVKVVLKS 461
IP P Y P EF ++ Y T D +IP ++EV K + +LK+
Sbjct: 142 IPRPLYDPADEFAIVLYDPTTDAD---EIIPDIKEVLAEKRKKDELLKN 187
>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 27.1 bits (57), Expect = 3.2
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -3
Query: 322 KRMAGMKETQLSAEIELLETDTKKKWTRPPISMGFEVPFAPSGFKVRY 179
K++ + TQ+ +ELL T T+++W P + + S F+VRY
Sbjct: 229 KKVVPFQSTQMLRIMELLGTPTEERW---PGLKNYPEYYQLSSFEVRY 273
>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 529 TAEICLLWCDTS*AQTLRPVGMKEMECSVSNL 624
T IC+ WC S A+T VG+ V+ L
Sbjct: 451 TVPICMAWCSASMAKTYGDVGVASSLALVTGL 482
>SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 451 PSLLGQKIEVKIPTPLNTSGVQLICLK 371
PS+L IE + T +G+Q+IC+K
Sbjct: 242 PSILSSSIETFLRTLKRETGLQVICIK 268
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 393 PLVFSGVGIFTSIFCPSREGLKLLF 467
P+V SG G+ ++CP++ G L+F
Sbjct: 162 PVVSSG-GVMADLWCPAQRGTALIF 185
>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 980
Score = 25.4 bits (53), Expect = 9.8
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -2
Query: 134 SSSGCATSDAPDSTRPGA----ERRGVEWLRESQRVRIFEKYNKK 12
+ GC + + DS+ PG+ + E RE Q+ EKY+ K
Sbjct: 2 ADKGCEAAQSKDSSAPGSGEPRPKTEKELERERQKAAKLEKYHAK 46
>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 25.4 bits (53), Expect = 9.8
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -3
Query: 415 PTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDT 257
P L+ + VQL+ L + Y ASEN + K +R+A + A+ +L + T
Sbjct: 229 PKKLSANDVQLLVLAIQKFYNASENTPLGK-ERLALLAAFSKGADFDLHKVAT 280
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,235,410
Number of Sequences: 5004
Number of extensions: 65669
Number of successful extensions: 210
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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