Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_D03
(819 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44) 94 1e-19
SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20) 43 3e-04
SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_44501| Best HMM Match : Adap_comp_sub (HMM E-Value=2.39622e-43) 34 0.12
SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018) 29 3.4
SB_54736| Best HMM Match : TF_Otx (HMM E-Value=1.7) 29 3.4
SB_22100| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_13014| Best HMM Match : DUF837 (HMM E-Value=2.2) 29 4.5
SB_4715| Best HMM Match : FlpD (HMM E-Value=1.1) 29 4.5
SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0) 28 7.9
SB_27321| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0) 28 7.9
SB_999| Best HMM Match : DUF1279 (HMM E-Value=1.2) 28 7.9
>SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)
Length = 331
Score = 94.3 bits (224), Expect = 1e-19
Identities = 55/94 (58%), Positives = 68/94 (72%), Gaps = 4/94 (4%)
Frame = -3
Query: 562 RYRTTKDISLPFRVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPLNTSGVQL 383
+YRTTKDISLPFRVIPLVREVGR++MEVKVVLKSNFKPS+LGQKIEV P SG+++
Sbjct: 242 KYRTTKDISLPFRVIPLVREVGRSRMEVKVVLKSNFKPSILGQKIEV----PFACSGLKV 297
Query: 382 ICLK---GKAKYKASENAIVW-KIKRMAGMKETQ 293
LK K Y + + I W + +G+ ET+
Sbjct: 298 RYLKVFEPKLNY-SDHDTIKWVRYISRSGLYETR 330
Score = 71.3 bits (167), Expect = 9e-13
Identities = 30/32 (93%), Positives = 30/32 (93%)
Frame = -1
Query: 177 LKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 82
LKVFEPKLNYSDHD IKWVRYI RSGLYETRC
Sbjct: 300 LKVFEPKLNYSDHDTIKWVRYISRSGLYETRC 331
>SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20)
Length = 216
Score = 43.2 bits (97), Expect = 3e-04
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = -2
Query: 686 RSGKPVVVIDDCQFHQCVKLSKFETEHSISFIP 588
R V ++D +FHQCV+LS+FE + +ISFIP
Sbjct: 169 RGKSKAVELEDVKFHQCVRLSRFENDRTISFIP 201
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -3
Query: 589 PPDGEFELMRYR 554
PPDGEFELM YR
Sbjct: 201 PPDGEFELMSYR 212
>SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 570
Score = 41.1 bits (92), Expect = 0.001
Identities = 17/62 (27%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = -3
Query: 364 AKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMGFEVP-FAPSGFK 188
A+YK +E ++W++K + G E ++ +++L + + P+S+ FE+P + SG +
Sbjct: 234 AEYKTAEKLLLWQVKSIRGGAEVAINIKLKLKDKAKSARKELGPVSLDFEIPMYICSGLQ 293
Query: 187 VR 182
+R
Sbjct: 294 IR 295
Score = 34.3 bits (75), Expect = 0.12
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -2
Query: 710 GNTDSDPARSGKPVVVIDDCQFHQCVKLSKFETEHSISFIP 588
GN D P++ V + DC FH+ V L +FE+ ++S +P
Sbjct: 148 GNADM-PSQVSSMGVKLADCNFHKSVNLDEFESSRTLSVLP 187
Score = 33.1 bits (72), Expect = 0.28
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = -3
Query: 589 PPDGEFELMRYRTTKDI--SLPFRVIPLVRE 503
PPDGEF +M YR ++ +LPF +I V E
Sbjct: 187 PPDGEFTVMSYRVAGELETTLPFSIITFVDE 217
>SB_44501| Best HMM Match : Adap_comp_sub (HMM E-Value=2.39622e-43)
Length = 822
Score = 34.3 bits (75), Expect = 0.12
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 662 IDDCQFHQCVKLSKFETEHSISFIP 588
+ CQFH+CV +S F HSI F P
Sbjct: 574 LQHCQFHKCVDVSAFNESHSIVFHP 598
>SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)
Length = 3561
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -1
Query: 606 FHLLHTHRTESLSS*GIAPQKTYLCRFA--SSRSCGRWAAP 490
+H++HTHRT + + G P +T + ++ S C W P
Sbjct: 2676 YHMMHTHRTLIIDNGGQHPLRTRIGDYSDLSRDGCRAWVLP 2716
>SB_54736| Best HMM Match : TF_Otx (HMM E-Value=1.7)
Length = 123
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 105 SVRCSAPT**RHGPSNSVSVQTPSX*RTLNPEGAKGTSNPMEMGG 239
+V S+P GPS ++S T RTLN + S P GG
Sbjct: 37 TVSSSSPLRRSPGPSGTISASTSGSPRTLNQDSPPSPSQPESDGG 81
>SB_22100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 571
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 105 SVRCSAPT**RHGPSNSVSVQTPSX*RTLNPEGAKGTSNPMEMGG 239
+V S+P GPS ++S T RTLN + S P GG
Sbjct: 485 TVPSSSPLRCSPGPSGTISASTSGSPRTLNQDSPPSPSQPESDGG 529
>SB_13014| Best HMM Match : DUF837 (HMM E-Value=2.2)
Length = 238
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 146 RTMTSSSGCATSDAPDSTRPGAERRGVEWLRE 51
RT T ++G A+++ +T A RRG++ LRE
Sbjct: 58 RTATQTAGTASAETSFTTEGAATRRGLQSLRE 89
>SB_4715| Best HMM Match : FlpD (HMM E-Value=1.1)
Length = 705
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 105 SVRCSAPT**RHGPSNSVSVQTPSX*RTLNPEGAKGTSNPMEMGG 239
+V S+P GPS ++S T RTLN + S P GG
Sbjct: 573 TVPSSSPLRCSPGPSGTISASTSGSPRTLNQDSPPSPSQPESDGG 617
>SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0)
Length = 1705
Score = 28.3 bits (60), Expect = 7.9
Identities = 19/78 (24%), Positives = 27/78 (34%)
Frame = -2
Query: 449 LPARTEDRSEDSNSAEHQRGATDXXXXXXXXXXXXERYRVEDQTHGGHEGDPAVCRD*AP 270
L A+ E D H A R ++ED+ + + +
Sbjct: 363 LQAKQESPKPDKTQVSHPDKAAGTAEEPKSSMTPEGRTQLEDKNTSEDKEPISKPEESIE 422
Query: 269 RDRHQEEVDAPAHLHGVR 216
R H EEV PAH GV+
Sbjct: 423 RKEHHEEVTHPAHKEGVK 440
>SB_27321| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -2
Query: 152 ITRTMTSSSGCATSDAPDSTRPGAERRGVEWLRE 51
+TR+ T ++G A+++ T A R G+++LRE
Sbjct: 56 VTRSATQTAGTASAETSFITEGAATRLGLQFLRE 89
>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1706
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -2
Query: 245 DAPAHLHGVRSSLCTLRIQGPLX*RC 168
D HG R LCT +QGP RC
Sbjct: 1026 DCKIGTHGYRCELCTNNVQGPECVRC 1051
>SB_999| Best HMM Match : DUF1279 (HMM E-Value=1.2)
Length = 637
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -2
Query: 152 ITRTMTSSSGCATSDAPDSTRPGAERRGVEWLRE 51
+TR+ T ++G A+++ T A R G+++LRE
Sbjct: 56 VTRSATQTAGTASAETSFITEGAATRLGLQFLRE 89
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,409,244
Number of Sequences: 59808
Number of extensions: 539917
Number of successful extensions: 1454
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1454
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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