Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_C19
(792 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0528 - 34526038-34526164,34526250-34526500,34526584-345268... 31 0.79
11_04_0367 - 16840732-16843428,16844425-16844760 31 1.0
07_03_1701 + 28823709-28824058,28824432-28824638,28825565-28825742 30 2.4
05_01_0360 + 2814139-2814627,2815203-2815334,2815480-2815583,281... 30 2.4
03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685... 29 4.2
03_04_0152 + 17740643-17741407 29 5.6
03_01_0297 + 2295291-2296369,2310477-2310702,2312269-2313216 29 5.6
01_04_0010 - 15058175-15058195,15058320-15058430,15059031-150592... 29 5.6
12_01_0991 - 10057736-10058249,10058412-10059241,10059266-100606... 28 7.4
>03_06_0528 -
34526038-34526164,34526250-34526500,34526584-34526804,
34526963-34527017
Length = 217
Score = 31.5 bits (68), Expect = 0.79
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 211 VDAAPRQQYRRWPPATSRICEPPRITKPLSS 303
VDA R+Q R+ PP++S EP T PL+S
Sbjct: 32 VDAFWRRQQRKQPPSSSTSSEPNATTSPLAS 62
>11_04_0367 - 16840732-16843428,16844425-16844760
Length = 1010
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 617 DEVRDKDGEFDDWFESDGQRELRQIFQGQAQIHDVLRDL 501
DE D D + +F+ QR Q+F G +HD++ DL
Sbjct: 477 DERNDGDKNGNRYFDELVQRSFLQLFSGSCIMHDLIHDL 515
>07_03_1701 + 28823709-28824058,28824432-28824638,28825565-28825742
Length = 244
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +2
Query: 71 MAVKLAQVAAGHGGGATCAWAISLCETPPTVCLMLVIESLNSVRN*GLMPPP 226
+AV L VAA GG A W + + P + +++E+ N+ +N +PPP
Sbjct: 4 LAVLLLVVAAVEGGAAWSFWPPAAGDEPYCLSWRVMVEA-NNAKNWPTVPPP 54
>05_01_0360 +
2814139-2814627,2815203-2815334,2815480-2815583,
2816180-2816292,2818409-2818506,2818636-2818815,
2818893-2819114,2819270-2819404,2819489-2819771,
2819858-2819931,2820164-2820384,2820463-2820550,
2820651-2820744,2820827-2821015,2821369-2821400,
2821542-2821621,2821718-2821807,2821911-2821980,
2822240-2822285,2822370-2822428,2822588-2822753,
2822929-2823107,2823186-2823392,2823529-2823633,
2823701-2823703
Length = 1152
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 590 FDDWFESDGQRELRQIFQGQAQIHDVLR 507
FDDWF+ G+ + ++ Q Q+H VLR
Sbjct: 470 FDDWFQISGENDQHEVVQ---QLHKVLR 494
>03_05_0967 +
29265465-29266214,29267718-29267944,29268428-29268557,
29268651-29268719,29268803-29268946,29269775-29270011,
29270897-29270998,29271131-29271396,29271766-29273410,
29274449-29275018
Length = 1379
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 354 RLGRAGGQQSAHDQHHSRAQGLRDXRWLANP 262
R+G +GG Q H QHHS + +R L P
Sbjct: 231 RIGYSGGGQGFHPQHHSMFKYVRPGATLGAP 261
>03_04_0152 + 17740643-17741407
Length = 254
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 53 MAATSRMAVKLAQVAAGHGGGATCAWA 133
MA +SR+A+ LA VAA GGA W+
Sbjct: 1 MAMSSRLALCLAVVAACAAGGAVADWS 27
>03_01_0297 + 2295291-2296369,2310477-2310702,2312269-2313216
Length = 750
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = -3
Query: 205 VPDRVEGLYHQHQADCRRRLAEANGPGAGSPAPVSCRDLR*FHRHPAGGRHAISAHVHIC 26
VPD V+ +A C+ +A G P P + L+ + RHP + HV C
Sbjct: 520 VPDEVK------KAICQTLMANKTELTQGKPLPRTASMLQRYGRHPTAIETIVVWHVATC 573
Query: 25 SVQK 14
+QK
Sbjct: 574 HLQK 577
>01_04_0010 -
15058175-15058195,15058320-15058430,15059031-15059246,
15059327-15059505,15059655-15059820,15059914-15059972,
15060065-15060107,15060285-15060354,15060458-15060547,
15060621-15060742,15060777-15060808,15060876-15061064,
15061148-15061241,15061325-15061412,15061498-15061718,
15061924-15061997,15062081-15062363,15062455-15062589,
15062721-15062942,15063029-15063208,15063305-15063402,
15063522-15063634,15064156-15064259,15064400-15064522,
15064857-15065192
Length = 1122
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -2
Query: 590 FDDWFESDGQRELRQIFQGQAQIHDVLR 507
FD+WF+ G+ + +++ Q Q+H VLR
Sbjct: 416 FDEWFQISGENDQQEVVQ---QLHKVLR 440
>12_01_0991 - 10057736-10058249,10058412-10059241,10059266-10060633,
10061785-10062327,10066274-10066498,10066590-10066640
Length = 1176
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 32 MNMSANCMAATSRMAVKLAQV-AAGHGGGATCAWAISLCETPPTVCLMLVIESLNSVRN 205
+N+SA MA TS +V L +V A G G +W + E P T+ + +ESL+ N
Sbjct: 980 VNLSA--MARTSGYSVLLDEVIATGQGAILNFSWNLINGEIPETIGQLKQLESLDLSHN 1036
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,552,030
Number of Sequences: 37544
Number of extensions: 369704
Number of successful extensions: 1499
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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