Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_C17
         (803 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...    68   2e-10
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    60   5e-08
UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Anther...    54   4e-06
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    40   0.073
UniRef50_Q2GXF3 Cluster: Putative uncharacterized protein; n=1; ...    35   2.8  
UniRef50_A6S3C1 Cluster: Putative uncharacterized protein; n=2; ...    35   2.8  
UniRef50_P38321 Cluster: Uncharacterized protein YBR225W; n=2; S...    34   3.6  

>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=9; cellular organisms|Rep: Endonuclease and
            reverse transcriptase-like protein - Bombyx mori (Silk
            moth)
          Length = 960

 Score = 68.1 bits (159), Expect = 2e-10
 Identities = 30/54 (55%), Positives = 40/54 (74%)
 Frame = -1

Query: 434  HFDKAARHENPLIVAAGNYIPDPADRMESSRRRPKHVISDPPDPLTVLLGTSST 273
            +FDKA RH+N LIVAA +Y P+P     S RRRP+HV++DP DP+T+ L T S+
Sbjct: 883  YFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITLALDTFSS 936


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 60.5 bits (140), Expect = 5e-08
 Identities = 44/105 (41%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
 Frame = -1

Query: 368 PADRMESSRRRPKHVISDPPDPLTVLLGTSSTGH-XXXXXXXXXXXXXRVN*LSDTAH*V 192
           P D    SRR P HV+SDP D L+VLL  SSTG+               +  L+ ++   
Sbjct: 26  PRDGATKSRRHPNHVLSDPRDSLSVLLDLSSTGYCPCRVRRATNPKTQPMKFLAGSSQ-- 83

Query: 191 SRRIFSVGRVSDXGGRFCEARLLLGFVLATSSGLSPVSSPTKVRV 57
           S R  S        GRFCEA LLLG VLA S  LSP   P + RV
Sbjct: 84  SSRFRS-------DGRFCEALLLLGLVLANSLRLSPYELPNRPRV 121


>UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Antheraea
           mylitta|Rep: Reverse transcriptase-like - Antheraea
           mylitta (Tasar silkworm)
          Length = 186

 Score = 54.0 bits (124), Expect = 4e-06
 Identities = 23/48 (47%), Positives = 32/48 (66%)
 Frame = -1

Query: 434 HFDKAARHENPLIVAAGNYIPDPADRMESSRRRPKHVISDPPDPLTVL 291
           +F+KAA H +PL+V+A NY P P       RRRP+H+  DPPD +T +
Sbjct: 94  YFEKAANHPSPLVVSAANYQPVP--NAARPRRRPRHIFIDPPDEITAV 139


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 39.9 bits (89), Expect = 0.073
 Identities = 20/31 (64%), Positives = 23/31 (74%)
 Frame = -3

Query: 249 SLATKGSTSKLTLRHSPLSFSPDLLSGSRFR 157
           SL T G +++   R  PLSFSPDLLSGSRFR
Sbjct: 380 SLKTTGHSTENEHRCCPLSFSPDLLSGSRFR 410


>UniRef50_Q2GXF3 Cluster: Putative uncharacterized protein; n=1;
           Chaetomium globosum|Rep: Putative uncharacterized
           protein - Chaetomium globosum (Soil fungus)
          Length = 451

 Score = 34.7 bits (76), Expect = 2.8
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -1

Query: 476 SPDTNASNV*CYWYHFDKAARHENPLIVAAGNYIPDPADRMES-SRRRPK 330
           SPD++ S+    W H DK A+ E+  + AAG ++P   DR  S S+ RP+
Sbjct: 39  SPDSD-SDENSKWIHRDKLAKIESAELQAAGIFVPRQRDRARSKSQNRPR 87


>UniRef50_A6S3C1 Cluster: Putative uncharacterized protein; n=2;
           Sclerotiniaceae|Rep: Putative uncharacterized protein -
           Botryotinia fuckeliana B05.10
          Length = 527

 Score = 34.7 bits (76), Expect = 2.8
 Identities = 18/34 (52%), Positives = 20/34 (58%)
 Frame = -1

Query: 440 WYHFDKAARHENPLIVAAGNYIPDPADRMESSRR 339
           W H DK AR EN  + AAG  IP P    +SSRR
Sbjct: 136 WIHRDKLARIENEELQAAGIPIPRPRTGSKSSRR 169


>UniRef50_P38321 Cluster: Uncharacterized protein YBR225W; n=2;
           Saccharomyces cerevisiae|Rep: Uncharacterized protein
           YBR225W - Saccharomyces cerevisiae (Baker's yeast)
          Length = 900

 Score = 34.3 bits (75), Expect = 3.6
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -1

Query: 416 RHENPLIVAAGNYIPDPA---DRMESSRRRPKHVISDPPDPLTVLL 288
           +H NP I    N I DP     +++     P+ VISDP D + +LL
Sbjct: 357 QHSNPTISTTSNKISDPTLYIQQLDIEANSPRPVISDPLDEIDILL 402


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 750,737,305
Number of Sequences: 1657284
Number of extensions: 14993324
Number of successful extensions: 40515
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 38462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40490
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69143070360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)