Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_C17
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    30   0.33 
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.4  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   7.2  
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    26   7.2  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   7.2  
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    25   9.5  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    25   9.5  
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit...    25   9.5  
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    25   9.5  

>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 667 PCKLFTATNLTS-HHANYNFTGFHLSYTMLLS 575
           PCKL    N +  HH+NY + GF LSY + LS
Sbjct: 215 PCKLIDLHNDSFLHHSNY-YAGFGLSYYLYLS 245


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = -3

Query: 690 QTHKTFYHHANFLPQQILPATTQTTILRGSTSLTRCYSHTEEANREHLSSTHKHALHRK 514
           QT K F+HH N  P + L AT+       S    +  S  E+    + SS H  A H +
Sbjct: 83  QTRKPFFHHFN--PFEFLEATSPLQQNGKSRDTEKPPSMKEKDLSSNSSSQHDKAFHER 139


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -1

Query: 491 PNTAASPDTNASNV*CYWYHFDKAAR-HE--NPLIVAAGNYIPDPADRMESS 345
           PN +  PD + +N+      FD +   HE  +PLI + G+Y+  P+  M SS
Sbjct: 359 PNQSFFPDVSGNNI------FDVSRNNHEVSSPLIQSPGSYVSMPSINMVSS 404


>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -1

Query: 656 FYRNKSYQPPRKLQFYGV--PPLLHDVTL 576
           FYRN++YQ  R L F  +   PLL  +TL
Sbjct: 332 FYRNRNYQNARSLFFASLLHLPLLFTLTL 360


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 332 KHVISDPPDPLTVLLGTSSTGH 267
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520


>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 681 KTFYHHANFLPQQIL 637
           +TF HHAN  P++IL
Sbjct: 13  RTFAHHANLTPRKIL 27


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -2

Query: 634 SHHANYNFTGFHLSYTMLLSH*GSQPRTLVKHAQARTSPEKPASA 500
           SH  +Y+    +LSY    +H G+    + K   A   P K   A
Sbjct: 150 SHQNSYSLNETYLSYDFFDNHRGASSSAVSKDGLASPRPTKDVDA 194


>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
           Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 103 VANTNPSKSRASQNLPPXSETRPTEKIRRETQWA 204
           +   +P   R + N+P        E+IR+E +WA
Sbjct: 125 IRGKSPEDIRKTFNIPNDFTPEEEEQIRKENEWA 158


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 427 IKRHDT-RTLSSWPPVTTFPILRTEWKAVDV 338
           I R DT + + S PPVT    ++  WKA+D+
Sbjct: 47  IIRSDTIQLVISCPPVTYSDEIQVPWKAIDL 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,987,815
Number of Sequences: 5004
Number of extensions: 58255
Number of successful extensions: 190
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)